Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2 113 3e-20 seq1 111 1e-19 >seq2 Length=9028361 Score = 113 bits (124), Expect = 3e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || |||||||| ||||| ||||| || ||| |||| |||| ||| Sbjct 3913422 ACCAAGTGTAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCTTCC 3913481 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || || || || || | || | || || ||||| | Sbjct 3913482 AGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCCGGAGGGATACCTTCTTTGTCCTGA 3913541 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | |||| ||| || |||||| |||| || ||||| || Sbjct 3913542 ATCTTGGCCTTGACGTTCTCGATCGTGTCAGAGGGCTCAACCTCGAGCGTGATGGTCTTG 3913601 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATTCGTAGACTTG 34994 || ||||| ||||| |||||||||||||| | | |||| || Sbjct 3913602 CCAGTGAGGGTCTTGACAAAGATCTGCATCGTGGGAGACGTG 3913643 Score = 102 bits (112), Expect = 5e-17 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| || || ||||| || ||| |||| |||| |||||||| ||||||||||| Sbjct 3913212 TCTTTCTGGATATTGTAGTCAGACAGGGTTCGGCCATCTTCCAGCTGCTTTCCGGCAAAG 3913271 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || |||||||| || | || | || |||||||| ||| || ||||| || Sbjct 3913272 ATGAGACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCTTGAATTTTGGCCTTGAC--AT 3913329 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | || | || || |||| ||| || || |||||||| || ||||| | Sbjct 3913330 TCTCGATAGTGTCTGAAGGTTCCACTTCGAGGGTGATTGTCTTTCCCGTTAGCGTCTTGA 3913389 Query 34969 CAAAGATCTGCATA 34982 | || ||||||||| Sbjct 3913390 CGAAAATCTGCATA 3913403 >seq1 Length=9333084 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAA 34848 ||| ||||| ||||| ||||| | |||| ||||| | || |||||||| || || || | Sbjct 5359775 TTCCTTCTGGATGTTGTAGTCGCTCAAGG-TTCGTCCGTCTTCCAGCTGCTTGCCTGCGA 5359833 Query 34849 ATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGG 34908 | || || ||||||||||| | || | ||| |||||||| ||||| ||||||| Sbjct 5359834 AGATGAGACGTTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGGATCTTAGCTTTGACGT 5359893 Query 34909 ATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 | || | ||| ||||| || |||| ||| || || ||||| ||||| ||||| | Sbjct 5359894 TCTCGATAGTGTCAGACGCCTCCACTTCGAGGGTGATTGTCTTTCCAGTGAGGGTCTTGA 5359953 Query 34969 CAAAGATCTGCAT 34981 | ||||||||||| Sbjct 5359954 CGAAGATCTGCAT 5359966 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| |||||| | ||| |||| ||||||||||| || ||||| Sbjct 5359548 TCCTTCTGTATGTTGTAGTCAGAAAGGGTGCGTCCATCCTCCAGCTGTTTACCCGCAAAG 5359607 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||| || || | || | || |||||||| |||||| |||||| Sbjct 5359608 ATCAGACGTTGTTGATCCGGAGGGATGCCTTCCTTGTCCTGAATCTTGGCCTTGACGTTC 5359667 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| || || || || | || |||||||| ||||| | ||||| || Sbjct 5359668 TCGATGGTGTCAGAAGCTTCGACCTCCAGCGTGATGGTTTTGCCCGTCAAGGTCTTGACG 5359727 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 5359728 AAGATCTGCATA 5359739 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| |||||||| ||||| ||||| || ||| | | |||| ||| Sbjct 5359986 ACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGATAGGGTCCTGCCATCTTCC 5360045 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| ||||| || || || || |||||||| | || | || ||||| || Sbjct 5360046 AGCTGTTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTATCCTGG 5360105 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || |||| || ||| || || || | || ||||| | Sbjct 5360106 ATCTTGGCCTTGAC--ATTCTCGATCGTGTCCGAGGCTTCCACCTCCAAAGTGATGGTCT 5360163 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || | ||||| || ||||||||||| Sbjct 5360164 TGCCAGTCAACGTCTTGACGAAGATCTGCAT 5360194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324632808705600