Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq2 118 9e-21 seq9 89.7 4e-12 >seq2 Length=9028361 Score = 118 bits (130), Expect = 9e-21 Identities = 162/222 (73%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 ||||| || || ||||||||||| ||| | | ||| |||||||| |||| || |||| Sbjct 3913185 AGACGCAGGACGAGATGAAGGGTCGACTCTTTCTGG--ATATTGTAGTCAGACAGGGTTC 3913242 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 |||||| || || ||||||||||| || || | ||||||||| |||||||| |||| Sbjct 3913243 GGCCATCTTCCAGCTGCTTTCCGGCAAAGATGAGACGTTGCTGATCCGGAGGAATGCCTT 3913302 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGA 563433 | || ||||||||||| || || ||| || || || | | | || |||||| Sbjct 3913303 CCTTGTCTTGAATTTTGGCCTTGACATTCTCGATAGTGTCTG-AAGGTTCCACTTCGAGG 3913361 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || | || || || || || || || |||||||| |||||| Sbjct 3913362 GTGATTGTCTTTCCCGTTAGCGTCTTGACGAAAATCTGCATA 3913403 >seq9 Length=1903873 Score = 89.7 bits (98), Expect = 4e-12 Identities = 180/264 (68%), Gaps = 6/264 (2%) Strand=Plus/Plus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| |||| || || || |||||||| || || | || | || || || || Sbjct 1704691 GGCATTGATCTAGGGACGACCTACAGTTGTGTCGGAGTCTTCCAGCACGGCAAGGTGGAG 1704750 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 ||||| || || || || ||||| | || ||||| ||||| | ||||| || || Sbjct 1704751 ATTATCGCTAACGACCAGGGTAATCGCACAACTCCCAGCTATGTGGCCTTCACCGACACA 1704810 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTACCAATACT 550174 |||| | || || ||||| || || |||| ||||| || || || ||||| Sbjct 1704811 GAACGGCTGGTGGGAGATGCTGCCAAGAATCAGGTAGCCA-TG--AACCCGCAAAATACC 1704867 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 | ||||| || ||||| | || ||| || | || | || | || || ||||| || Sbjct 1704868 GTCTTTGACGCCAAACGCCTCATCGGACGACGCTTCGACGACCCAACCGTCCAGGCTGAC 1704927 Query 550235 ATGAAGCATTGGCCTTTCCAAATT 550258 |||||||||||||| ||| || || Sbjct 1704928 ATGAAGCATTGGCCCTTCAAAGTT 1704951 Score = 87.8 bits (96), Expect = 1e-11 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| | || || || || || || || || || || || |||||||||||||| || Sbjct 1705174 GTTACCAACGCCGTTATCACAGTTCCTGCTTACTTCAACGATTCACAACGTCAAGCGACG 1705233 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 ||||| || || ||||| || | ||||| || || || ||||| ||||| || ||| Sbjct 1705234 AAAGACGCCGGGAAGATTGCCGGCTTGAATGTGCTGCGCATCATCAACGAACCGACGGCT 1705293 Query 550511 GCTGCACTTGCATATGGACTTGATAA 550536 || || || || |||||||| || || Sbjct 1705294 GCCGCTCTGGCCTATGGACTGGACAA 1705319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029285423098000