Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq4 96.9 3e-15 >seq4 Length=4740345 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 29813 CGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCC 29872 |||| | |||||||| ||| || || ||||| ||||||| || ||| ||||| || | Sbjct 2915676 CGTGGTTCAGGTAGATGTGCGCATCACCCAGCGTGTGGATGAATTCTGCCGGTCTCAGAC 2915735 Query 29873 CGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCC 29932 | ||||| || || |||||||| || | || ||||||||||| ||||| || || |||| Sbjct 2915736 CCGTGACATGCGCGATCATGTAGGTTAAAAGCGAGTAGCTGGCAATGTTGAACGGAACCC 2915795 Query 29933 CGAGCCCC 29940 | || ||| Sbjct 2915796 CAAGACCC 2915803 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/92 (84%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 29939 CCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACT 29998 |||| ||| ||||||||||||| | |||||||||||| |||||||| ||||| |||| Sbjct 2915878 CCATATCCGCCGACCTCTGGTACATCTGACACGAGAGTCCTCCGTCGGATACGTAGAACT 2915937 Query 29999 GACAC-ATGGTGTGGCACGGAGGAAGAGCCAT 30029 | ||| | || ||| ||||||||||||||||| Sbjct 2915938 G-CACTAGGGCGTGACACGGAGGAAGAGCCAT 2915968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408616603994600