Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq2 143 2e-29 seq1 125 6e-24 >seq2 Length=9028361 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||| | ||| | || | ||||||||| || ||||| || |||||||| || | Sbjct 3913176 CCTCCTCGCAGACGCAGGACGAGATGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGAC 3913235 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||| | |||| |||| ||||| || ||||| || | ||| || ||||| || ||| Sbjct 3913236 AGGGTTCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATGAGACGTTGCTGATCCGGAGGA 3913295 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || ||||||||||| || ||| | || | |||||| || | ||||||| Sbjct 3913296 ATGCCTTCCTTGTCTTGAATTTTGGCCTTGACATTCTCGATAGTGTCTGAAGGTTCCACT 3913355 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| || || || |||| || || || || |||||||| Sbjct 3913356 TCGAGGGTGATTGTCTTTCCCGTTAGCGTCTTGACGAAAATCTGCAT 3913402 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | || || || ||||| || ||||| || || ||||| |||| | Sbjct 3913404 CCTCCACGGAGACGGAGGACCAAGTGTAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAG 3913463 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||| | |||| |||| ||||| || || || |||| |||||||||||| || || Sbjct 3913464 AGGGTTCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCCGGAGGG 3913523 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||| || ||||| || || || | || | |||||||| | || || Sbjct 3913524 ATACCTTCTTTGTCCTGAATCTTGGCCTTGACGTTCTCGATCGTGTCAGAGGGCTCAACC 3913583 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 || || |||| || ||||| || | || || ||||| |||||||| || Sbjct 3913584 TCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATCGT 3913633 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || || || || ||||| || || || || ||| || || || | || ||| Sbjct 3912966 ACCAAGTGGAGAGTCGACTCTTTCTGAATGTTATAGTCGCTGAGTGTCCTTCCGTCTTCC 3913025 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||| || || || || || || || ||||| ||||||||| Sbjct 3913026 AGCTGCTTGCCAGCGAAGATCAAGCGTTGCTGGTCCGGAGGGATACCTTCCTTATCTTGA 3913085 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| ||| | || | || || || | ||||||||| | |||| || ||| Sbjct 3913086 ATCTTGGCTTTGACATTCTCAATGGTATCCGAAGGTTCCACTTCCAAGGTGATGGTCTTG 3913145 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || || || || ||||| Sbjct 3913146 CCTGTCAGTGTCTTGACGAAGATTTGCAT 3913174 >seq1 Length=9333084 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 ||||||||||| ||||| || || ||||| ||||| || | | || | |||| ||| Sbjct 5359530 ACTAAATGAAGAGTAGACTCCTTCTGTATGTTGTAGTCAGAAAGGGTGCGTCCATCCTCC 5359589 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | || ||||| ||||| |||| ||| |||||||| || || |||||||| || || ||| Sbjct 5359590 AGCTGTTTACCCGCAAAGATCAGACGTTGTTGATCCGGAGGGATGCCTTCCTTGTCCTGA 5359649 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | |||||||| | ||| || || || |||| |||||| Sbjct 5359650 ATCTTGGCCTTGACGTTCTCGATGGTGTCAGAAGCTTCGACCTCCAGCGTGATGGTTTTG 5359709 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || || || || |||||||| Sbjct 5359710 CCCGTCAAGGTCTTGACGAAGATCTGCAT 5359738 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | || || |||||||| || ||||| || || ||||| || | Sbjct 5359968 CCTCCACGGAGACGAAGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAT 5360027 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || ||| |||| |||| || || || || || |||| |||||| || || || ||| Sbjct 5360028 AGGGTCCTGCCATCTTCCAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGA 5360087 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| ||||| || || || || ||| | || | ||||| || | |||||| Sbjct 5360088 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATCGTGTCCGAGGCTTCCACC 5360147 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 || | ||||| || ||||| || || || || || || ||||||||||| Sbjct 5360148 TCCAAAGTGATGGTCTTGCCAGTCAACGTCTTGACGAAGATCTGCATGGT 5360197 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| ||||| || || || ||||| ||| | |||| | || |||| ||| Sbjct 5359764 TGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGCTCAAGGTTCGTCCGTCTTCCAGCTGC 5359823 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || ||||| || || | ||| || || || || ||||| ||||| || || || || || Sbjct 5359824 TTGCCTGCGAAGATGAGACGTTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGGATCTTA 5359883 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| || | || | ||||||||||| |||||||| || |||| || || || || Sbjct 5359884 GCTTTGACGTTCTCGATAGTGTCAGACGCCTCCACTTCGAGGGTGATTGTCTTTCCAGTG 5359943 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | || || || || ||||||||| Sbjct 5359944 AGGGTCTTGACGAAGATCTGCATG 5359967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396277434071400