Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq14 102 2e-16 seq2 102 2e-16 seq18 96.9 6e-15 >seq14 Length=1536585 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 ||||| || || || || ||||| | || | || ||||||| ||| | | ||| Sbjct 515530 TCGTCGCGACTTATCAGTTCGTTGCTGTAGGTCAAGCCTGGCATGAGCCCTCGTTTCTTG 515589 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCG 48274 |||||||| || |||||||| || ||| ||| ||||||||||| || || ||||||||| Sbjct 515590 AGCCAGAATATGGCCGCGAAGGACCCACTGAAAAAGATGCCCTCAACCGCGGCGAACGCG 515649 Query 48275 GTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCC 48334 || | || || ||||| || | | | |||||||| ||||||||| || || Sbjct 515650 ACGACTCGTTCGCCAAAAGATGCTTCACTATTCGAGATCCACCGAAGCGCCCAATCCGCT 515709 Query 48335 TTCTTCTTGATGCATGGCATCGTCTC 48360 |||||||| | | ||||| || || Sbjct 515710 TTCTTCTTCACACTCGGCATGGTTTC 515735 >seq2 Length=9028361 Score = 102 bits (112), Expect = 2e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 212901 AGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAA 212960 ||||| ||||||| | ||||| || || ||||| || | | | | | ||| Sbjct 7430505 AGGTGTTGGTTGACGACTTGGAACTCGCCAGAGAGGACTCGACGAGCGAAGATGTTGCTG 7430564 Query 212961 GTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATG 213020 |||||||| |||||||| || |||||||| |||||||| || |||||||| || |||||| Sbjct 7430565 GTGTAGGGTTCGATGCTTTCATTGTTCCCGAGAATCTGCGCGGTGCTGGCGGTAGGCATG 7430624 Query 213021 GGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGAT 213061 ||||||| || |||||||| | | || |||| | |||| Sbjct 7430625 GGAGCCAGGAGAAGACTGTTACGGAGACCATGCTGGGCGAT 7430665 Score = 87.8 bits (96), Expect = 3e-12 Identities = 129/181 (71%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 213780 GGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACC 213839 || ||||| | | |||||| |||| || ||| | ||||||| ||||| |||| | Sbjct 7431716 GGGCACATCAAACACCAGTCGCCGTTCTCCTGGACGCGACGCATGAAGAGGTCGGGGATC 7431775 Query 213840 CACAGCGCGGTGAACAGGTCCCTGGTCCTCCT--CTCGTCCACTCCAGAGTTTTTGCGCA 213897 |||| || || || || | || ||| | ||| || || | ||| || |||| Sbjct 7431776 CACAAGGCCAGAAAGAGATCTCGGG--CTCGTTGCTCCTCGGACCCGGTGTTCTTCCGCA 7431833 Query 213898 GATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG 213957 | || |||||||| |||| || |||||||||||||||| |||||| || ||||| |||| Sbjct 7431834 GTTCCAGAAAGTCGAAGACATCGGCGTGCCACGGCTCCAAGTAGATAGCGAAGGCACCCG 7431893 Query 213958 G 213958 | Sbjct 7431894 G 7431894 >seq18 Length=652692 Score = 96.9 bits (106), Expect = 6e-15 Identities = 150/212 (71%), Gaps = 12/212 (6%) Strand=Plus/Plus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTT- 48213 ||||| || |||||||| ||||| |||| |||||||||||| | || | |||| Sbjct 263916 TCGTCGCGACTGATGAGTTCGTTGCTGAAGGTGAGACCAGGCATTATTCCTC---GTTTA 263972 Query 48214 --GAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAAC 48271 ||||||||| || | ||||| |||||| ||||||||||||||| || | ||||| Sbjct 263973 CGGAGCCAGAAGATGGAGGCGAAGGAGCCACTGAAGAAGATGCCCTCGACGGAAGCGAAG 264032 Query 48272 GCGGTGAGCCTCTCTCCGAAAGAAGCGTT---CTTGTCTGAGATCCAGGAAAGCGCCCAG 48328 ||| || | || ||| | | ||||| | || |||||| ||||||||| Sbjct 264033 GCGACGACGCGTTCGCCGTAGGTGGCGTTGGACGAGT---TGATCCAACTCAGCGCCCAG 264089 Query 48329 TCTGCCTTCTTCTTGATGCATGGCATCGTCTC 48360 || ||||||||| | | ||||||||||| Sbjct 264090 TCAGCCTTCTTCCGCACAGACGGCATCGTCTC 264121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931530471168000