Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2 120 6e-22 seq14 84.2 4e-11 >seq2 Length=9028361 Score = 120 bits (132), Expect = 6e-22 Identities = 137/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 221999 GGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATC 222058 || ||||||| || ||||| ||| || | ||| | ||||||||||||| |||||| Sbjct 7431716 GGGCACATCAAACACCAGTCGCCGTTCTCCTGGACGCGACGCATGAAGAGGTCGGGGATC 7431775 Query 222059 CACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGA 222118 |||| ||| |||||||||||| || || |||||||| ||| |||| |||| ||| Sbjct 7431776 CACAAGGCCAGAAAGAGATCTCGGGCTCGTTGCTCCTCGGACCCGGTGTTCTTCCGCAGT 7431835 Query 222119 TCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGT 222178 |||| ||| || || | || |||||||||||||||| |||| || | || || || Sbjct 7431836 TCCAGAAAGTCGAAGACATCGGCGTGCCACGGCTCCAAGTAGATAGCGAAGGCACCCGGA 7431895 Query 222179 CGCT 222182 |||| Sbjct 7431896 CGCT 7431899 Score = 89.7 bits (98), Expect = 1e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 221110 GTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGT 221169 ||| | ||| || |||||||| || || ||||| || | | | | | ||| || Sbjct 7430507 GTGTTGGTTGACGACTTGGAACTCGCCAGAGAGGACTCGACGAGCGAAGATGTTGCTGGT 7430566 Query 221170 GAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGG 221229 | | ||||||||||| || ||||| || || ||||| || ||||||||||| |||||||| Sbjct 7430567 GTAGGGTTCGATGCTTTCATTGTTCCCGAGAATCTGCGCGGTGCTGGCGGTAGGCATGGG 7430626 Query 221230 TGCCACCAGCAGACTGTTGCGCAGTCC 221256 |||| || |||||||| || || || Sbjct 7430627 AGCCAGGAGAAGACTGTTACGGAGACC 7430653 >seq14 Length=1536585 Score = 84.2 bits (92), Expect = 4e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 |||||||| || | || || || || || || ||||||||||||||||| || || || Sbjct 515666 TTTGGCGAACGAGTCGTCGCGTTCGCCGCGGTTGAGGGCATCTTTTTCAGTGGGTCCTTC 515607 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989 |||||||| |||||||||||| | ||| |||||| || || || |||||| Sbjct 515606 GCGGCCATATTCTGGCTCAAGAAACGAGGGCTCATGCCAGGCTTGACCTACAGCAACGAA 515547 Query 25990 CTCATCAGCAGGGACGAGG 26008 || || || | ||||||| Sbjct 515546 CTGATAAGTCGCGACGAGG 515528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928842477888000