Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2 127 1e-23 seq8 102 5e-16 seq9 89.7 3e-12 seq1 87.8 1e-11 >seq2 Length=9028361 Score = 127 bits (140), Expect = 1e-23 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || ||||| || || |||||||| || ||||| | ||| || |||| || ||| Sbjct 3913182 CGCAGACGCAGGACGAGATGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGACAGGGTT 3913241 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | |||||| || |||||||| ||||| || |||||||| ||||| |||||||| ||| Sbjct 3913242 CGGCCATCTTCCAGCTGCTTTCCGGCAAAGATGAGACGTTGCTGATCCGGAGGAATGCCT 3913301 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 |||||||||||||| || |||||| || ||||| || | || ||| ||| Sbjct 3913302 TCCTTGTCTTGAATTTTGGCCTTGACATTCTCGATAGTGTCTGAAGGTTCCACTTCGAGG 3913361 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || || ||||| |||||||| || Sbjct 3913362 GTGATTGTCTTTCCCGTTAGCGTCTTGACGAAAATCTG 3913399 Score = 89.7 bits (98), Expect = 3e-12 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| || ||||| ||||| || || | ||||| || || ||||| || |||||||| Sbjct 3913020 TCTTCCAGCTGCTTGCCAGCGAAGATCAAGCGTTGCTGGTCCGGAGGGATACCTTCCTTA 3913079 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 ||||||||||| ||||||| ||||| ||||| | || ||| | ||| || Sbjct 3913080 TCTTGAATCTTGGCTTTGACATTCTCAATGGTATCCGAAGGTTCCACTTCCAAGGTGATG 3913139 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| ||||| ||||| Sbjct 3913140 GTCTTGCCTGTCAGTGTCTTGACGAAGATTTG 3913171 >seq8 Length=2054787 Score = 102 bits (112), Expect = 5e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 || || ||||| || ||||||||||| || || || || || ||||| |||||||| || Sbjct 10097 GTGACGGATGCTGTCATTACTGTTCCGGCCTACTTCAACGACTCTCAGCGTCAAGCCACA 10038 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 || ||||| |||| ||||| || || || || | || || || || ||||| ||||| Sbjct 10037 AAGGATGCCGGAAAGATTGCCGGCCTGAACGTCCTTCGAATCATCAACGAACCCACAGCT 9978 Query 474848 GCCGCACTTGCTTATGGTCTTGATAAGAA 474876 ||||| | || ||||| || || ||||| Sbjct 9977 GCCGCTTTGGCCTATGGACTGGACAAGAA 9949 Score = 102 bits (112), Expect = 5e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 474335 GGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAA 474394 || |||||| | ||||| || ||||||||||| | ||||| ||| |||| ||||| || Sbjct 10577 GGGATTGATCTGGGAACGACCTACAGTTGTGTGGGTGTTTTTCAACATGGCAAAGTGGAG 10518 Query 474395 ATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACT 474454 || || |||||||| ||||| ||| | |||||||| ||||| | ||||| || || Sbjct 10517 ATCATCGCCAATGATCAAGGGAATCGCACAACACCCAGCTATGTCGCCTTTACCGATACG 10458 Query 474455 GAACATCTTATTGGAGATGCTGCTAA 474480 |||| || | ||||| ||||| || Sbjct 10457 GAACGCCTGGTGGGAGACGCTGCCAA 10432 >seq9 Length=1903873 Score = 89.7 bits (98), Expect = 3e-12 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG-C 474795 || || || || ||||| || || || || ||||| ||||||||||| || ||||| | | Sbjct 1705183 GCCGTTATCACAGTTCCTGCTTACTTCAACGATTCACAACGTCAAGCGACGAAAGACGCC 1705242 Query 474796 GGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACT 474855 |||||| ||||| || | ||||| | || || || || ||||| || || ||||| || Sbjct 1705243 GGGAAG-ATTGCCGGCTTGAATGTGCTGCGCATCATCAACGAACCGACGGCTGCCGCTCT 1705301 Query 474856 TGCTTATGGTCTTGATAAGAA 474876 || ||||| || || ||||| Sbjct 1705302 GGCCTATGGACTGGACAAGAA 1705322 >seq1 Length=9333084 Score = 87.8 bits (96), Expect = 1e-11 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || | |||||| ||| || || | || || |||| || || Sbjct 5359517 ACGAAGACGGAGGACTAAATGAAGAGTAGACTCCTTCTGTATGTTGTAGTCAGAAAGGGT 5359576 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| || || || || || ||||| || |||||||||||||| ||||| || || Sbjct 5359577 GCGTCCATCCTCCAGCTGTTTACCCGCAAAGATCAGACGTTGTTGATCCGGAGGGATGCC 5359636 Query 480671 TTCCTTGTCTTGAATCTT 480688 ||||||||| |||||||| Sbjct 5359637 TTCCTTGTCCTGAATCTT 5359654 Score = 86.0 bits (94), Expect = 4e-11 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||||||||| ||||| || || || ||| || | || || || ||| || | Sbjct 5359746 CGAAGACGGAGGACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTC-GCTCAAGGT 5359804 Query 480612 CTGTTA-TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || ||||| || ||||| || || || || |||||||| || || || ||||| || Sbjct 5359805 TCGTCCGTCTTCCAGCTGCTTGCCTGCGAAGATGAGACGTTGCTGGTCCGGTGGAATCCC 5359864 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||| || ||||| |||||| || ||||| |||| | | | ||| | Sbjct 5359865 TTCCTTGTCCTGGATCTTAGCTTTGACGTTCTCGATAGTGTCAGACGCCTCCA-CTTCGA 5359923 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| || || || || ||||| ||||| ||||| || || Sbjct 5359924 GGGTGATTGTCTTTCCAGTGAGGGTCTTGACGAAGATCTG 5359963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268170621029600