Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq3 122 1e-22 >seq3 Length=5402078 Score = 122 bits (134), Expect = 1e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 47967 TTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTA 48026 || ||| | ||| ||| ||| || || ||||| || ||| | || |||||||| ||| Sbjct 1088039 TTTACCTCTTCTGGGACTTTCGTGGTTGAAAAGTATGCCATTGCAAGCATACATGTTGTA 1087980 Query 48027 TGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGA 48086 | ||| | | |||| | || |||||||| |||| || || || || ||||| || || Sbjct 1087979 CGCTTCCCTAAAGTTGATGACGATCCAGTAGGCATACAGCTTGGCTACGCCATACGGTGA 1087920 Query 48087 ACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTC 48146 || || ||||| || ||||| || |||| || |||| || ||||| || ||||| || Sbjct 1087919 TCGCGGGTAGAACGGGGTGGTTTCCTTCTGAGGGATCTCCTGGACCTTGCCGTAAAGCTC 1087860 Query 48147 ACTGGTGGATGCTTGATAGA 48166 ||||||||| ||||| |||| Sbjct 1087859 ACTGGTGGAAGCTTGGTAGA 1087840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665492736264000