Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq2 105 1e-17 >seq2 Length=9028361 Score = 105 bits (116), Expect = 1e-17 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || |||| || || || || ||||| | || | |||||| ||||| Sbjct 3913167 ATTTGCATCCCTCCTCGCAGACGCAGGACGAGATGAAGGGTCGACTCTTTCTGGATATTG 3913226 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | |||| ||| || | || ||||||||||| || | | || ||| Sbjct 3913227 TAGTCAGACAGGGTTCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATGAGACGTTGCTGA 3913286 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || ||||| || ||||| ||||||| || | ||| ||||| || ||| Sbjct 3913287 TCCGGAGGAATGCCTTCCTTGTCTTGAATTTTGGCCTTGACATTCTCGATAGTGTCTGAA 3913346 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || ||||| || || || || || || |||||||| || || || || ||||| Sbjct 3913347 GGTTCCACTTCGAGGGTGATTGTCTTTCCCGTTAGCGTCTTGACGAAAATCTGCAT 3913402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899652150864000