Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4 107 6e-18 >seq4 Length=4740345 Score = 107 bits (118), Expect = 6e-18 Identities = 188/268 (70%), Gaps = 8/268 (3%) Strand=Plus/Plus Query 302574 TTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGT 302633 ||||||| ||||| | |||||||||||| ||||| || | ||| ||||||||||| Sbjct 2139112 TTCCATAGCTTTGATCAGACGACGCTGAATGTAACCGGTCTCGGCTGTCTTTACAGCTGT 2139171 Query 302634 ATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCC 302692 || |||| ||| ||||||||||||| | ||||||||| | ||| || ||| || | Sbjct 2139172 GTCGATTAAACCTTCACGACCACCCATGGAATGGAAGAAGAACTCGGAAGG-CGTCAGAC 2139230 Query 302693 CCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGG 302749 | | | | ||| | || ||||| || || || || || ||||||| | | Sbjct 2139231 CAGCCAAGTACGAGTTTTCGACGAAGCCTCGGCTTTCTGGACCGTAATCGTC---CGTAA 2139287 Query 302750 TAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCT 302809 | ||||| || || || | || | | ||| | || |||||||| || |||||||||| Sbjct 2139288 TGAAGTGAGGAAGAGTTCGGTGGCGAAAACCGAAAGGAATACGCTTGCCTTCAACGTTCT 2139347 Query 302810 GCTGTCCCAGGCACGAAATCATCTGCGA 302837 |||| |||| || | ||| | || ||| Sbjct 2139348 GCTGGCCCACACAAGCAATAACCTACGA 2139375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471813828467400