Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq18 132 6e-25 seq2 113 6e-19 seq14 98.7 1e-14 seq12 86.0 8e-11 >seq18 Length=652692 Score = 132 bits (146), Expect = 6e-25 Identities = 171/234 (73%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 869175 GCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGC 869234 ||| |||| ||||||||||||| | ||||||||| |||| ||| || ||||| | || | Sbjct 263909 GCGCACCT-CGTCGCGACTGATGAGTTCGTTGCTGAAGGTGAGACCAGGCATTATTCCTC 263967 Query 869235 GCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGG 869294 | || |||||| ||||||| | ||| ||| ||| |||||||||||||||| | Sbjct 263968 GTTTACGGAGCCAGAAGATGGAGGCGAAGGAGCCACTGAAGAAGATGCCCTCGACGGAAG 264027 Query 869295 CAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCG 869354 | ||| ||| || || ||| | ||||| || | | ||||||||| ||| || Sbjct 264028 CGAAGGCGACGACGCGTTCGCCGTAGGTGGCGTTG---GACGAGTTGATCCAACTCAGCG 264084 Query 869355 CCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT 869408 ||||||| ||||| |||| ||| ||||||| ||| || | ||| ||| |||| Sbjct 264085 CCCAGTCAGCCTTCTTCCGCACAGACGGCATCGTCTCCACAGCGTTAAACAGGT 264138 >seq2 Length=9028361 Score = 113 bits (124), Expect = 6e-19 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||||||| || ||| | || || || || |||||||||||||| | || Sbjct 7825924 GCTTGGCCAGTTCTCCAGGCAGCAAGAGACGAACAGCCGTCTGGATCTCGCGGGAAGTGA 7825983 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||| | || | ||||| || || | ||||||| |||| | Sbjct 7825984 TGGTAGACTTCTTGTTGTACTGGGATAGACGCGAAGCTTCTCCGGCGATGCGCTCGAAGA 7826043 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| | ||| | ||| ||||| || |||||||| Sbjct 7826044 TGTCGTTGACGAAGGAGTTCATGATGGCCATGGCTTTGGAGGAGACACCAGTGTCGGGGT 7826103 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 | ||||||||||| || ||||||||| || ||||||||| Sbjct 7826104 GGACCTGCTTGAGGACTTTGTAGATGTACACCGAGTACGA 7826143 Score = 109 bits (120), Expect = 7e-18 Identities = 156/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | || || || || |||||||||||||| | || Sbjct 7597198 GCTTGGCCAGCTCTCCAGGCAGCAAGAGACGAACAGCTGTCTGGATCTCGCGGGAAGTGA 7597139 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||| | || | ||||| ||| || | ||||||| || | | Sbjct 7597138 TGGTAGATTTCTTGTTGTACTGGGATAGACGCGAGGCTTCTCCGGCGATGCGCTCAAAGA 7597079 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | |||||||| || |||||||||| | ||| | ||| ||||| ||| |||||||| Sbjct 7597078 TATCGTTGACGAAGGAGTTCATGATGGCCATGGCTTTGGAGGAGACGCCAGTGTCGGGGT 7597019 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 | ||||||||||| || ||||||||| || ||||||||| Sbjct 7597018 GGACCTGCTTGAGGACTTTGTAGATGTACACCGAGTACGA 7596979 >seq14 Length=1536585 Score = 98.7 bits (108), Expect = 1e-14 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 869183 TCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTG 869242 ||||||||||| |||| ||||||||| ||| | ||| |||||||| || || |||||| Sbjct 515530 TCGTCGCGACTTATCAGTTCGTTGCTGTAGGTCAAGCCTGGCATGAGCCCTCGTTTCTTG 515589 Query 869243 AGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCG 869302 ||||| || ||||| ||| || ||||||||||||||| || ||||| || || Sbjct 515590 AGCCAGAATATGGCCGCGAAGGACCCACTGAAAAAGATGCCCTCAACCGCGGCGAACGCG 515649 Query 869303 ATGAGCCGCTCGGCAAA 869319 | || || ||| |||| Sbjct 515650 ACGACTCGTTCGCCAAA 515666 Score = 91.5 bits (100), Expect = 2e-12 Identities = 170/247 (69%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||| |||| ||||| |||||||||||||||||||| || | | | || | | | Sbjct 515864 CCGAATGGACATTCTCCATGGCGATCTGGAAGCCGTAGAATGAGCGGGCTTCAGGTATCT 515923 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 |||| || | | |||||| ||| | ||| ||| |||||||||||||| ||||||| Sbjct 515924 GGACTTCTTGCGAGAACCGCTCGGTTAAGTTTTCGTTGACGATGCCGTCGCTAGCGGCGA 515983 Query 869751 AAAAAGCCAGGA-CGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGG 869809 | || ||||||| || | ||| ||| | | || ||||| | || ||||| Sbjct 515984 AGAAGGCCAGGATTGTAC-TGACGAAGAGCTGTTCTTCGTCATTCAGGCTGTTCCAGTCT 516042 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | |||| | ||||| || || || ||||||||| |||||| || || ||| Sbjct 516043 TCCATGTCTTTGGCCAGGTCTACTTCTTCCACGGTCCAGAAGGAGGCCGTTGCTTTCTTG 516102 Query 869870 TACATCT 869876 ||||||| Sbjct 516103 TACATCT 516109 >seq12 Length=1744794 Score = 86.0 bits (94), Expect = 8e-11 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 1254448 CGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGA 1254507 ||||||| |||| || |||||||| || |||||||||| | ||| | ||| |||| Sbjct 271102 CGATGCGCTCGAAGATATCGTTGACGAAGGAGTTCATGATGGCCATGGCTTTGGATGAGA 271043 Query 1254508 TGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 || ||||||||| |||||||| || |||||||||||| || |||||| || Sbjct 271042 CACCAGTGTCGGGGTGGACCTGCTTCAGTACCTTGTAGATGTACACCGAGTAGGA 270988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107122787063400