Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2 140 3e-28 seq1 125 6e-24 >seq2 Length=9028361 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 ||||||||||||||| | || || || || || || || || |||||||| || || || Sbjct 3913633 ACGATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACGCTCGAGGTTGAGCCC 3913574 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || ||||| || ||||||||||| || ||||| ||| Sbjct 3913573 TCTGACACGATCGAGAACGTCAAGGCCAAGATTCAGGACAAAGAAGGTATCCCTCCGGAT 3913514 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 ||||| ||| ||||||| || || || |||||||| ||| ||| | | || || || Sbjct 3913513 CAACAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGAACCCTCTCCGACTAC 3913454 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || || || ||||| ||||||||||| | || | || ||||| Sbjct 3913453 AACATCCAGAAAGAGTCGACCCTACACTTGGTCCTCCGTCTCCGTGGAGG 3913404 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || |||||||| || || || || || |||||||| ||| | | Sbjct 3913402 ATGCAGATTTTCGTCAAGACGCTAACGGGAAAGACAATCACCCTCGAAGTGGAACCTTCA 3913343 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || || |||||||| ||||| || ||||| ||||| Sbjct 3913342 GACACTATCGAGAATGTCAAGGCCAAAATTCAAGACAAGGAAGGCATTCCTCCGGATCAG 3913283 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | ||||||||||| || |||||||| ||| ||| | |||| || || || Sbjct 3913282 CAACGTCTCATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGAACCCTGTCTGACTACAAT 3913223 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || || ||||| || || | || |||| |||| ||||| Sbjct 3913222 ATCCAGAAAGAGTCGACCCTTCATCTCGTCCTGCGTCTGCGAGGAGG 3913176 Score = 102 bits (112), Expect = 7e-17 Identities = 165/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| ||||| | || || || || || || || || || | ||||| ||| | | Sbjct 3913175 GATGCAAATCTTCGTCAAGACACTGACAGGCAAGACCATCACCTTGGAAGTGGAACCTTC 3913116 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || | || ||| ||||| ||||| || ||||| || ||||| || || Sbjct 3913115 GGATACCATTGAGAATGTCAAAGCCAAGATTCAAGATAAGGAAGGTATCCCTCCGGACCA 3913056 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAA--ACATGTCAG--ATT 24878 ||||| |||||||| || || || |||||||| || || ||| ||| |||| | | Sbjct 3913055 GCAACGCTTGATCTTCGCTGGCAAGCAGCTGGAAGA--CG-GAAGGACAC-TCAGCGACT 3913000 Query 24879 ATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||| || || ||||| || |||||||| | || |||| || || Sbjct 3912999 ATAACATTCAGAAAGAGTCGACTCTCCACTTGGTACTTCGCCTGCGTGGTGG 3912948 >seq1 Length=9333084 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || ||||| || ||||| || || ||||| | Sbjct 5359738 ATGCAGATCTTCGTCAAGACCTTGACGGGCAAAACCATCACGCTGGAGGTCGAAGCTTCT 5359679 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| ||||| || ||||| |||||| Sbjct 5359678 GACACCATCGAGAACGTCAAGGCCAAGATTCAGGACAAGGAAGGCATCCCTCCGGATCAA 5359619 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| |||||||||| || ||||||||||||||| | | | | || || || ||| Sbjct 5359618 CAACGTCTGATCTTTGCGGGTAAACAGCTGGAGGATGGACGCACCCTTTCTGACTACAAC 5359559 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| || || || || || || Sbjct 5359558 ATACAGAAGGAGTCTACTCTTCATTTAGT 5359530 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || ||| | || || || || || || | || || |||||| Sbjct 5360197 ACCATGCAGATCTTCGTCAAGACGTTGACTGGCAAGACCATCACTTTGGAGGTGGAAGCC 5360138 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || |||||||| || || ||||| || ||||| || Sbjct 5360137 TCGGACACGATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCGGAC 5360078 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || ||| ||||||| ||||| ||||||||||| ||| || | | | || || || Sbjct 5360077 CAGCAGCGTCTGATCTTCGCCGGCAAACAGCTGGAAGATGGCAGGACCCTATCTGACTAC 5360018 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || || || || || || |||||||| | || | || |||||| Sbjct 5360017 AACATCCAGAAAGAGTCCACCCTTCACTTGGTCCTTCGTCTCCGTGGAGGC 5359967 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || |||||||| || || | Sbjct 5359966 ATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACAATCACCCTCGAAGTGGAGGCGTCT 5359907 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| ||||| ||||| || || || || || Sbjct 5359906 GACACTATCGAGAACGTCAAAGCTAAGATCCAGGACAAGGAAGGGATTCCACCGGACCAG 5359847 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | ||||| || || || |||||||| || ||| | || || || ||| Sbjct 5359846 CAACGTCTCATCTTCGCAGGCAAGCAGCTGGAAGACGGACGAACCTTGAGCGACTACAAC 5359787 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 || || ||||||||||| || ||| Sbjct 5359786 ATCCAGAAGGAATCGACCCTCCAC 5359763 Score = 86.0 bits (94), Expect = 6e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 24805 AGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAG 24864 ||| || ||||| |||||||| ||||||||||| ||||| || |||||||| ||| || Sbjct 1625537 AGGTATCCCTCCGGATCAACAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCAG 1625478 Query 24865 AAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACA 24906 | ||||||| |||||||| || || || ||||| || || Sbjct 1625477 GACACTGTCAGACTATAACATCCAGAAAGAGTCGACTCTTCA 1625436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449896475256000