Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2 147 3e-29 seq18 111 2e-18 seq14 104 4e-16 >seq2 Length=9028361 Score = 147 bits (162), Expect = 3e-29 Identities = 198/273 (73%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 1485457 TTGATGGCATCGTTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCC 1485516 ||| |||| | ||||||||||||| || ||||| || || |||||||||||| ||||| Sbjct 7825872 TTGTTGGCGCTGGTGTACTTGGTGACAGCTTTGGTGCCTTCCGAGACGGCGTGCTTGGCC 7825931 Query 1485517 AGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTG 1485576 ||||| || ||| | || || || || |||||||||||||||| ||| || Sbjct 7825932 AGTTCTCCAGGCAGCAAGAGACGAACAGCCGTCTGGATCTCGCGGGAAGTGATGGTAGAC 7825991 Query 1485577 CGCTTGTTAGTGC-GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTT 1485635 |||||| || | | | || || || || | ||||||| |||| |||||||| Sbjct 7825992 TTCTTGTT-GTACTGGGATAGACGCGAAGCTTCTCCGGCGATGCGCTCGAAGATGTCGTT 7826050 Query 1485636 GACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1485695 ||| || ||||||||||| | ||| | |||| ||||| || ||||||||| ||||| Sbjct 7826051 GACGAAGGAGTTCATGATGGCCATGGCTTTGGAGGAGACACCAGTGTCGGGGTGGACCTG 7826110 Query 1485696 CTTGAGCACCTTGTAAACAAAGGACGAGTACGA 1485728 |||||| || ||||| | | ||||||||| Sbjct 7826111 CTTGAGGACTTTGTAGATGTACACCGAGTACGA 7826143 Score = 138 bits (152), Expect = 2e-26 Identities = 187/258 (72%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 ||||||||||| || ||||| || || |||||||||||| ||||||| || || ||| Sbjct 7597235 TACTTGGTGACAGCTTTGGTGCCTTCCGAGACGGCGTGCTTGGCCAGCTCTCCAGGCAGC 7597176 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC-G 1485590 | || || || || |||||||||||||||| ||| || |||||| || | | Sbjct 7597175 AAGAGACGAACAGCTGTCTGGATCTCGCGGGAAGTGATGGTAGATTTCTTGTT-GTACTG 7597117 Query 1485591 CGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1485650 | || || ||| || | ||||||| || | || |||||||| || |||||||| Sbjct 7597116 GGATAGACGCGAGGCTTCTCCGGCGATGCGCTCAAAGATATCGTTGACGAAGGAGTTCAT 7597057 Query 1485651 GATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 ||| | ||| | |||| ||||| ||| ||||||||| ||||||||||| || ||||| Sbjct 7597056 GATGGCCATGGCTTTGGAGGAGACGCCAGTGTCGGGGTGGACCTGCTTGAGGACTTTGTA 7596997 Query 1485711 AACAAAGGACGAGTACGA 1485728 | | ||||||||| Sbjct 7596996 GATGTACACCGAGTACGA 7596979 Score = 86.0 bits (94), Expect = 1e-10 Identities = 120/167 (72%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 2071832 ACCAGTCGCCGCCAGTCACC---ACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGT 2071888 ||||||||||| || || ||||| ||||| || |||||| |||||| | | Sbjct 7431729 ACCAGTCGCCG---TTCTCCTGGACGCGACGCATGAAGAGGTCGGGGATCCACAAGGCCA 7431785 Query 2071889 AAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGT 2071948 ||||||||| || || || | |||||| ||| |||||| ||| || || ||| Sbjct 7431786 GAAAGAGATCTCGGGCTCGTTGCTCCTCGGACCCGGTGTTCTTCCGCAGTTCCAGAAAGT 7431845 Query 2071949 CGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCC 2071995 ||| || ||||||||||||||||||| |||| || ||||| ||| Sbjct 7431846 CGAAGACATCGGCGTGCCACGGCTCCAAGTAGATAGCGAAGGCACCC 7431892 >seq18 Length=652692 Score = 111 bits (122), Expect = 2e-18 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 794338 GCACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGC 794397 |||||| ||||||||||||| | ||||||||| ||| ||| || ||||| | || || Sbjct 263911 GCACCT-CGTCGCGACTGATGAGTTCGTTGCTGAAGGTGAGACCAGGCATTATTCCTCGT 263969 Query 794398 TTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCA 794457 || |||||| ||||||| ||| ||| ||| |||||||||||||||| || Sbjct 263970 TTACGGAGCCAGAAGATGGAGGCGAAGGAGCCACTGAAGAAGATGCCCTCGACGGAAGCG 264029 Query 794458 AAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCC 794517 ||| |||||| || ||| | | ||| | | | ||||||||| ||| |||| Sbjct 264030 AAGGCGACGACGCGTTCGCCGTAGGTGGCGTTGGAC---GAGTTGATCCAACTCAGCGCC 264086 Query 794518 CACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT 794569 || || ||||| |||| ||| || |||| ||| || | ||| ||| |||| Sbjct 264087 CAGTCAGCCTTCTTCCGCACAGACGGCATCGTCTCCACAGCGTTAAACAGGT 264138 >seq14 Length=1536585 Score = 104 bits (114), Expect = 4e-16 Identities = 143/196 (73%), Gaps = 7/196 (4%) Strand=Plus/Plus Query 794344 TCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTG 794403 ||||||||||| |||| ||||||||| || | ||| |||||||| || || |||||| Sbjct 515530 TCGTCGCGACTTATCAGTTCGTTGCTGTAGGTCAAGCCTGGCATGAGCCCTCGTTTCTTG 515589 Query 794404 AGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCG 794463 ||||| || ||||| ||| || ||||||||||||||| || ||||| || || Sbjct 515590 AGCCAGAATATGGCCGCGAAGGACCCACTGAAAAAGATGCCCTCAACCGCGGCGAACGCG 515649 Query 794464 ACGAGCCGCTCGGCAAAAG-TG-TCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACT 794521 |||| || ||| |||||| || | || || || | ||||||| | |||||| | Sbjct 515650 ACGACTCGTTCGCCAAAAGATGCTTCA----CTATTCG-AGATCCACCGAAGCGCCCAAT 515704 Query 794522 CTGCCTTTTTCCTCAC 794537 | || || ||| |||| Sbjct 515705 CCGCTTTCTTCTTCAC 515720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916225125087800