Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1 123 2e-23 seq2 122 6e-23 >seq1 Length=9333084 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | ||| |||||||| ||||| ||||| | | | || | || Sbjct 5359755 AGGACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGCTCAAGGTTCGTCCGTCT 5359814 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || |||||||| || ||||||||||| | || | ||| |||||||| Sbjct 5359815 TCCAGCTGCTTGCCTGCGAAGATGAGACGTTGCTGGTCCGGTGGAATCCCTTCCTTGTCC 5359874 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||||| | || | ||| ||||| || || | ||| || ||| Sbjct 5359875 TGGATCTTAGCTTTGACGTTCTCGATAGTGTCAGACGCCTCCACTTCGAGGGTGATTGTC 5359934 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| ||||||||||| || |||||||||||| Sbjct 5359935 TTTCCAGTGAGGGTCTTGACGAAGATCTGCATG 5359967 Score = 116 bits (128), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| |||| ||| ||||| ||||| ||||| |||||| | | |||| Sbjct 5359983 AGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGATAGGGTCCTGCCATCT 5360042 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| || || |||||||||||||| || |||||||| | || | || ||||| || Sbjct 5360043 TCCAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTATCC 5360102 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || ||||| || || |||| || ||| || || || | || |||| Sbjct 5360103 TGGATCTTGGCCTTGAC--ATTCTCGATCGTGTCCGAGGCTTCCACCTCCAAAGTGATGG 5360160 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| || || | ||||| || |||||||||||| Sbjct 5360161 TCTTGCCAGTCAACGTCTTGACGAAGATCTGCATG 5360195 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| || ||| |||| |||| ||||| || || || || || Sbjct 5359547 CTCCTTCTGTATGTTGTAGTCAGAAAGGGTGCGTCCATCCTCCAGCTGTTTACCCGCAAA 5359606 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||||| ||||| || || | || | || |||||||| | || || |||||| Sbjct 5359607 GATCAGACGTTGTTGATCCGGAGGGATGCCTTCCTTGTCCTGAATCTTGGCCTTGACGTT 5359666 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | ||| || ||||| || | || ||||| || ||||| | |||||| || Sbjct 5359667 CTCGATGGTGTCAGAAGCTTCGACCTCCAGCGTGATGGTTTTGCCCGTCAAGGTCTTGAC 5359726 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 5359727 GAAGATCTGCAT 5359738 >seq2 Length=9028361 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | ||| ||| ||||| ||||| ||||| || ||| | || |||| Sbjct 3913419 AGGACCAAGTGTAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCT 3913478 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || ||||||||||| || || || || | || | || || ||||| Sbjct 3913479 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCCGGAGGGATACCTTCTTTGTCC 3913538 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | |||| ||| || ||| || || | || |||||| Sbjct 3913539 TGAATCTTGGCCTTGACGTTCTCGATCGTGTCAGAGGGCTCAACCTCGAGCGTGATGGTC 3913598 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||||||||| |||||||||||||| Sbjct 3913599 TTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 3913630 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| | || | |||||| || |||| ||| ||| ||||| || || ||||| || Sbjct 3913176 CCTCCTCGCAGACGCAGGACGAGATGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGAC 3913235 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | || |||| ||||| ||||||||||| ||||| || |||||||| || | || Sbjct 3913236 AGGGTTCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATGAGACGTTGCTGATCCGGAGGA 3913295 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || |||||||| | ||||| ||||| || || || | || | || | Sbjct 3913296 ATGCCTTCCTTGTCTTGAATTTTGGCCTTGAC--ATTCTCGATAGTGTCTGAAGGTTCCA 3913353 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| || ||||||||||| || ||||| || || |||||||| Sbjct 3913354 CTTCGAGGGTGATTGTCTTTCCCGTTAGCGTCTTGACGAAAATCTGCAT 3913402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692006123800