Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq8 109 4e-18 seq9 107 1e-17 seq2 96.9 3e-14 >seq8 Length=2054787 Score = 109 bits (120), Expect = 4e-18 Identities = 180/260 (69%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 282614 ACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCA 282673 ||||| || ||||| | |||||| || || || || | |||| | ||| | || Sbjct 10318 ACTTTGAAGGGCCAGTGTTTCATGTCGGACTGCACTGTAGGGTCGTCGAAACGGCGTCCG 10377 Query 282674 ATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCT 282733 || | ||| || || ||||| | || || || || | || | || | ||||| Sbjct 10378 ATAAGTCGCTTGGCGTCAAAGACGGTGTTTTGTGCGTTCATGGCTACCTGGTTCTTGGCA 10437 Query 282734 GCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTA 282793 || ||||| | ||| |||| || || ||||| | ||||| || ||||||||||| Sbjct 10438 GCGTCTCCCACCAGGCGTTCCGTATCGGTAAAGGCGACATAGCTGGGTGTTGTGCGATTC 10497 Query 282794 CCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAA 282853 ||||||||||| || || || || ||||| |||| ||| | ||||| |||||||| | Sbjct 10498 CCTTGATCATTGGCGATGATCTCCACTTTGCCATGTTGAAAAACACCCACACAACTGTAG 10557 Query 282854 GTTGTTCCTAAATCAATACC 282873 || ||||| | |||||| || Sbjct 10558 GTCGTTCCCAGATCAATCCC 10577 Score = 102 bits (112), Expect = 6e-16 Identities = 122/165 (74%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || || ||||| || ||||| ||||| || ||||| || || |||| | || Sbjct 9949 TTCTTGTCCAGTCCATAGGCCAAAGCGGCAGCTGTGGGTTCGTTGATGATTCGAAGGACG 10008 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || || ||||| |||| ||||| || |||||||| | || || ||||| || || Sbjct 10009 TTCAGGCCGGCAATCTTTCCGGCATCCTTTGTGGCTTGACGCTGAGAGTCGTTGAAGTAG 10068 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAA 282496 || ||||||||||| || ||||| || || ||||| || |||| Sbjct 10069 GCCGGAACAGTAATGACAGCATCCGTCAC--CTTTTAAAAAATAA 10111 >seq9 Length=1903873 Score = 107 bits (118), Expect = 1e-17 Identities = 181/262 (69%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 282612 TAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTAC 282671 ||||||| || ||||||| ||||| || | || || || |||| | || || | Sbjct 1704952 TAACTTTGAAGGGCCAATGCTTCATGTCAGCCTGGACGGTTGGGTCGTCGAAGCGTCGTC 1704893 Query 282672 CAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGG 282731 | || | ||||| || ||||| | ||||| || || | || | |||| |||| Sbjct 1704892 CGATGAGGCGTTTGGCGTCAAAGACGGTATTTTGCGGGTTCATGGCTACCTGATTCTTGG 1704833 Query 282732 CTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGAT 282791 | |||||||| | ||| ||||||| || || || | ||||| ||||||||||||| Sbjct 1704832 CAGCATCTCCCACCAGCCGTTCTGTGTCGGTGAAGGCCACATAGCTGGGAGTTGTGCGAT 1704773 Query 282792 TACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAA 282851 |||| || || || || ||||| || || || || | || | || || |||||||| Sbjct 1704772 TACCCTGGTCGTTAGCGATAATCTCCACCTTGCCGTGCTGGAAGACTCCGACACAACTGT 1704713 Query 282852 AAGTTGTTCCTAAATCAATACC 282873 | || || |||| |||||| || Sbjct 1704712 AGGTCGTCCCTAGATCAATGCC 1704691 Score = 95.1 bits (104), Expect = 9e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || || ||||| || | ||| ||||| || ||||| || || || | || ||| Sbjct 1705322 TTCTTGTCCAGTCCATAGGCCAGAGCGGCAGCCGTCGGTTCGTTGATGATGCGCAGCACA 1705263 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || | || ||||| | || || ||||| || ||||| | |||||||||||| || || Sbjct 1705262 TTCAAGCCGGCAATCTTCCCGGCGTCTTTCGTCGCTTGACGTTGTGAATCGTTGAAGTAA 1705203 Query 282452 GCAGGAACAGTAATAACGGC 282471 |||||||| || |||||||| Sbjct 1705202 GCAGGAACTGTGATAACGGC 1705183 >seq2 Length=9028361 Score = 96.9 bits (106), Expect = 3e-14 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 282326 TCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 282385 ||||| |||||| | || | || ||||||||||| || || || || || | || Sbjct 2495170 TCTTGTGCTTTATCCATGCCGAAAGCCAAAGCAGCAGCTGTAGGCTCGTTGATGACTCGG 2495111 Query 282386 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 282445 | ||| || || ||||| || ||| |||||||| |||||||| | ||||| ||||| Sbjct 2495110 AGAACGTTGAGTCCAGCTATCTGTCCCGCATCTTTGGTGGCTTGACGCTGTGAGTCGTTG 2495051 Query 282446 AAATATGCAGGAACAGTAATAACGGCAT 282473 ||||| || ||||| ||||| ||||||| Sbjct 2495050 AAATAGGCCGGAACGGTAATGACGGCAT 2495023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740620580845200