Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2 174 3e-38 seq1 161 2e-34 >seq2 Length=9028361 Score = 174 bits (192), Expect = 3e-38 Identities = 179/233 (77%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 82579 ACCTA-CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAA 82637 ||||| || || | || || || || ||||| ||||| || |||||||| || ||||| Sbjct 3912942 ACCTATCCACCACGCAGGCGAAGTACCAAGTGGAGAGTCGACTCTTTCTGAATGTTATAG 3913001 Query 82638 TCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCT 82697 || || | || |||||||| || || || ||||| ||||| | | ||| || || Sbjct 3913002 TCGCTGAGTGTCCTTCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAGCGTTGCTGGTCC 3913061 Query 82698 GGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT 82757 ||||| || |||||||||||||||||||| ||||| ||||| ||||| ||||| |||| Sbjct 3913062 GGAGGGATACCTTCCTTATCTTGAATCTTGGCTTTGACATTCTCAATGGTATCCGAAGGT 3913121 Query 82758 TCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || |||||||| || || ||||||||||||| ||||| || || || ||||| Sbjct 3913122 TCCACTTCCAAGGTGATGGTCTTGCCTGTCAGTGTCTTGACGAAGATTTGCAT 3913174 >seq1 Length=9333084 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || ||||| || || || |||||||| || || || |||||| Sbjct 5359968 CCTCCACGGAGACGAAGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAT 5360027 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | || || ||||| || ||||| || || ||||| || | || || || ||||| Sbjct 5360028 AGGGTCCTGCCATCTTCCAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGA 5360087 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| || ||||| || || ||||| || ||||| || | ||| || Sbjct 5360088 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATCGTGTCCGAGGCTTCCACC 5360147 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || |||||||| ||||||||||| || || |||||||| Sbjct 5360148 TCCAAAGTGATGGTCTTGCCAGTCAACGTCTTGACGAAGATCTGCAT 5360194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981824684067800