Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq2 95.1 2e-14 >seq2 Length=9028361 Score = 95.1 bits (104), Expect = 2e-14 Identities = 202/291 (69%), Gaps = 8/291 (3%) Strand=Plus/Minus Query 183025 TGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACGAATG 183084 ||||| || | || || ||||||| |||||||| ||| ||| |||| | || ||| Sbjct 7730686 TGGAACGCCGCGCAGATGCAGATGAACAGAGAAGGTAAATGTCATGGTTTCATGCGCATG 7730627 Query 183085 TACTGGGCTAAAAAGATACTTGAATGGAC-AAGAACTCCGGAAGATGC-TTTGAGTTATA 183142 |||||||| || ||||| ||||| ||||| ||||| || || | || | ||||| | Sbjct 7730626 TACTGGGCCAAGAAGATCCTTGAGTGGACGGAGAAC-CCACAACAGGCGCTGGAGTTCT- 7730569 Query 183143 GTATCTATATGAACAATAAGTACGAACTAGACGGTACG-GATCCTAACGGATACGTAGGT 183201 || | |||| ||||||| | || | | ||| || || || || || || || Sbjct 7730568 CCATAAAGTTGAATGATAAGTA-TAGCTTGGATGGACGAGACCCGAATGGCTATGTGGGA 7730510 Query 183202 TGTATGTGGTCTATTTGCGGATTACACGA-TAGAGCGTGGAAAGAAAGACCTATATTTGG 183260 || |||||||| || || ||| ||| || || || ||| |||| || | ||||| Sbjct 7730509 TGCATGTGGTCCATCTGTGGAACACATGACCAGGGC-TGGGCAGAACGAGAGGTGTTTGG 7730451 Query 183261 AAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGTTGC 183311 |||||| | |||||||| ||| | | | ||||| || |||||||| || Sbjct 7730450 AAAGATTCGCTATATGAACTATAATGGATGTAAGAGAAAGTTTGATGTGGC 7730400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903408941472000