Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1 120 3e-22 seq2 118 1e-21 >seq1 Length=9333084 Score = 120 bits (132), Expect = 3e-22 Identities = 155/211 (73%), Gaps = 6/211 (3%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCA---TCGTGGACGAGTCCTCG 133511 || || | ||||||||||||||| || ||||| || | || || | | || || Sbjct 5359989 AAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGATAGGGTCCTG--CCA-TCTTCC 5360045 Query 133512 AGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTG 133571 ||||| ||||| ||| | || || ||||||||||| ||||| ||||||||||| || | Sbjct 5360046 AGCTGTTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTATCCTGG 5360105 Query 133572 ATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 ||||| ||||| | ||| | |||||| | || ||||| || | |||| ||| ||| Sbjct 5360106 ATCTTGGCCTTGACATTCTCGATCGTGTCCGAGGCTTCCACCTCCAAAGTGATGGTCTTG 5360165 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCATGG 133662 || |||| || || ||||| |||||||||| Sbjct 5360166 CCAGTCAACGTCTTGACGAAGATCTGCATGG 5360196 Score = 113 bits (124), Expect = 4e-20 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| || || ||||| || ||||| |||| || || ||| || ||||||||||| Sbjct 5359769 GGTCGATTCCTTCTGGATGTTGTAGTCGCTCAAGGTTCGTCCGTCTTCCAGCTGCTTGCC 5359828 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| || |||||||| || || || ||||||||||| |||||| || Sbjct 5359829 TGCGAAGATGAGACGTTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGGATCTTAGCTTT 5359888 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| | | |||||| |||| ||||| || || || || || || Sbjct 5359889 GACGTTCTCGATAGTGTCAGACGCCTCCACTTCGAGGGTGATTGTCTTTCCAGTGAGGGT 5359948 Query 133643 TTTTACGAAAATCTGCATGGCT 133664 || ||||| ||||||||| || Sbjct 5359949 CTTGACGAAGATCTGCATGCCT 5359970 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || ||||| |||||||| ||||| || | ||| | | | ||||| || Sbjct 5359533 AAATGAAGAGTAGACTCCTTCTGTATGTTGTAGTCAGAAAGGGTGCGTCCA-TCCTCCAG 5359591 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| || ||||| | || || || || || || |||||||||||||||||||| || Sbjct 5359592 CTGTTTACCCGCAAAGATCAGACGTTGTTGATCCGGAGGGATGCCTTCCTTGTCCTGAAT 5359651 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | ||| | ||||| | | || || || | |||| ||||||||| Sbjct 5359652 CTTGGCCTTGACGTTCTCGATGGTGTCAGAAGCTTCGACCTCCAGCGTGATGGTTTTGCC 5359711 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || ||||| |||||||| Sbjct 5359712 CGTCAAGGTCTTGACGAAGATCTGCAT 5359738 >seq2 Length=9028361 Score = 118 bits (130), Expect = 1e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || |||| ||| ||||||||||| || ||||| ||| | || | | | || || || Sbjct 3913425 AAGTGTAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCA-TCTTCCAG 3913483 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| | || || ||||| || || |||||||| ||||| ||||| || Sbjct 3913484 CTGCTTGCCAGCGAAGATCAGACGCTGTTGATCCGGAGGGATACCTTCTTTGTCCTGAAT 3913543 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | ||| | |||||| | |||||| || |||| |||| ||| ||||| Sbjct 3913544 CTTGGCCTTGACGTTCTCGATCGTGTCAGAGGGCTCAACCTCGAGCGTGATGGTCTTGCC 3913603 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || || |||||||| Sbjct 3913604 AGTGAGGGTCTTGACAAAGATCTGCAT 3913630 Score = 114 bits (126), Expect = 1e-20 Identities = 152/206 (74%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||||||||| |||||||| || || || | | | || || |||| Sbjct 3913199 ATGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGACAGGGTTCGGCCA-TCTTCCAGCT 3913257 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || || | ||||| || ||||| || ||||| |||||||||||||| ||| | Sbjct 3913258 GCTTTCCGGCAAAGATGAGACGTTGCTGATCCGGAGGAATGCCTTCCTTGTC-TTGAATT 3913316 Query 133576 TTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || | ||||| | ||| | ||||| | || ||||| |||| ||||| || || || Sbjct 3913317 TTGGCCTTGACATTCTCGATAGTGTCTGAAGGTTCCACTTCGAGGGTGATTGTCTTTCCC 3913376 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || |||||||||||||| Sbjct 3913377 GTTAGCGTCTTGACGAAAATCTGCAT 3913402 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||||||||| || || || |||| | || ||| || ||||||||||| Sbjct 3912978 GTCGACTCTTTCTGAATGTTATAGTCGCTGAGTGTCCTTCCGTCTTCCAGCTGCTTGCCA 3913037 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || | || |||||||| |||||||| |||||||| || ||||| ||| Sbjct 3913038 GCGAAGATCAAGCGTTGCTGGTCCGGAGGGATACCTTCCTTATCTTGAATCTTGGCTTTG 3913097 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| || || | || ||||| || | ||||| ||| ||||| ||||| || Sbjct 3913098 ACATTCTCAATGGTATCCGAAGGTTCCACTTCCAAGGTGATGGTCTTGCCTGTCAGTGTC 3913157 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 3913158 TTGACGAAGATTTGCAT 3913174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483419591448000