Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2 125 2e-23 seq1 120 7e-22 >seq2 Length=9028361 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| ||||| || ||||| || ||||| | ||||||||| ||| ||| Sbjct 3913399 CAGATTTTCGTCAAGACGCTAACGGGAAAGACAATCACCCTCGAAGTGGAACCTTCAGAC 3913340 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| || |||||||| || ||||| ||| ||||| ||| Sbjct 3913339 ACTATCGAGAATGTCAAGGCCAAAATTCAAGACAAGGAAGGCATTCCTCCGGATCAGCAA 3913280 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| |||||||||||| |||||||||| | || || | || ||||| || Sbjct 3913279 CGTCTCATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGAACCCTGTCTGACTACAATATC 3913220 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||||||||| || ||||| || || || | || ||| Sbjct 3913219 CAGAAAGAGTCGACCCTTCATCTCGTCCTGCGTCTGCGA 3913181 Score = 113 bits (124), Expect = 1e-19 Identities = 141/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || ||||| || || ||||| |||||||||||| ||| || || | || Sbjct 3913160 CAAGACACTGACAGGCAAGACCATCACCTTGGAAGTGGAACCTTCGGATACCATTGAGAA 3913101 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||| || ||||||||| || ||||| || |||||| ||| | | |||| Sbjct 3913100 TGTCAAAGCCAA-GATTCAAGATAAGGAAGGTATCCCTCCGGACCAGCAACGCTTGATCT 3913042 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 |||| || |||||| ||||||| |||||||| | ||| || ||| | |||||||||| Sbjct 3913041 TCGCTGGCAAGCAGCTGGAAGACGGAAGGACACTCAGCGACTATAACATTCAGAAAGAGT 3912982 Query 206363 CTACTCTTCAC 206373 | ||||| ||| Sbjct 3912981 CGACTCTCCAC 3912971 Score = 102 bits (112), Expect = 2e-16 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| || || || ||||| | || || || |||||| Sbjct 3913627 CAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACGCTCGAGGTTGAGCCCTCTGAC 3913568 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||| || |||||||| || ||||| || Sbjct 3913567 ACGATCGAGAACGTCAAGGCCAAGATTCAGGACAAAGAAGGTATCCCTCCGGATCAACAG 3913508 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||| || |||||| |||||||||| | || | |||| |||||| || Sbjct 3913507 CGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGAACCCTCTCCGACTACAACATC 3913448 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||||||||| || || ||| Sbjct 3913447 CAGAAAGAGTCGACCCTACAC 3913427 Score = 96.9 bits (106), Expect = 8e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 ||| || | || || || ||||| || ||||||||||||| ||| ||||||| || || Sbjct 3913181 TCGCAGACGCAGGACGAGATGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGACAGGGT 3913240 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||||||||||||||||| ||||| || ||||| ||| Sbjct 3913241 TCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATGAGACGTTGCTGA 3913286 >seq1 Length=9333084 Score = 120 bits (132), Expect = 7e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| ||| | || || || || ||||||||||| |||||| || ||| Sbjct 5360191 CAGATCTTCGTCAAGACGTTGACTGGCAAGACCATCACTTTGGAGGTGGAAGCCTCGGAC 5360132 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || ||||| ||| |||||| || Sbjct 5360131 ACGATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCGGACCAGCAG 5360072 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| || ||| |||||||||| ||||| | | || |||||| || Sbjct 5360071 CGTCTGATCTTCGCCGGCAAACAGCTGGAAGATGGCAGGACCCTATCTGACTACAACATC 5360012 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||||||||| || |||||| Sbjct 5360011 CAGAAAGAGTCCACCCTTCAC 5359991 Score = 105 bits (116), Expect = 2e-17 Identities = 79/93 (85%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || || |||||||| ||||||||||||| |||||||| | || ||||| ||||||||| Sbjct 1625430 ACGAGATGAAGAGTCGACTCTTTCTGGATGTTATAGTCTGACAGTGTCCTGCCATCTTCC 1625489 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||||||||||||||| | || |||||| Sbjct 1625490 AGCTGCTTTCCGGCGAAGATCAAACGCTGTTGA 1625522 Score = 95.1 bits (104), Expect = 3e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || ||||| ||||| |||| || ||| ||||||| Sbjct 5359735 CAGATCTTCGTCAAGACCTTGACGGGCAAAACCATCACGCTGGAGGTCGAAGCTTCTGAC 5359676 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||| || || ||||| || ||||| ||| Sbjct 5359675 ACCATCGAGAACGTCAAGGCCAAGATTCAGGACAAGGAAGGCATCCCTCCGGATCAACAA 5359616 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || || ||| |||| |||||| | || | | || |||||| | Sbjct 5359615 CGTCTGATCTTTGCGGGTAAACAGCTGGAGGATGGACGCACCCTTTCTGACTACAACATA 5359556 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 ||||| |||||||||||||| Sbjct 5359555 CAGAAGGAGTCTACTCTTCA 5359536 Score = 91.5 bits (100), Expect = 3e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358 |||||||||||||||||| |||||||||| ||||| || | || || ||| |||||||| Sbjct 1625509 ATCTTCGCCGGAAAGCAGCTGGAAGATGGCAGGACACTGTCAGACTATAACATCCAGAAA 1625450 Query 206359 GAGTCTACTCTTCACCTTGT 206378 ||||| |||||||| || || Sbjct 1625449 GAGTCGACTCTTCATCTCGT 1625430 Score = 86.0 bits (94), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 204769 GTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 204828 |||||| || ||||||||||||| || ||||||| | ||||| |||||||||||||| Sbjct 5359991 GTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGATAGGGTCCTGCCATCTTCCAGCTG 5360050 Query 204829 CTTTCCGGCGAAGATAAGCCGTTGTTG 204855 || ||||||||||| || || || || Sbjct 5360051 TTTGCCGGCGAAGATCAGACGCTGCTG 5360077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181817771584200