Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2 105 6e-18 seq1 87.8 2e-12 >seq2 Length=9028361 Score = 105 bits (116), Expect = 6e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| |||| || | ||| | | | |||||||| || || |||||||| || ||| Sbjct 3913182 CGCAGACGCAGGACGAGATGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGACAGGGTT 3913241 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || |||||| ||||| || |||| | |||| ||||| || ||||| ||||| |||||| Sbjct 3913242 CGGCCATCTTCCAGCTGCTTTCCGGCAAAGATGAGACGTTGCTGATCCGGAGGAATGCCT 3913301 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || |||||| || | | || | ||| || | || |||||||||| Sbjct 3913302 TCCTTGTCTTGAATTTTGGCCTTGACATTCTCGATAGTGTCTGAAGGTTCCACTTCGAGG 3913361 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || || || || || | |||||||||||| Sbjct 3913362 GTGATTGTCTTTCCCGTTAGCGTCTTGACGAAAATCTGCAT 3913402 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| |||| | | |||||||| || |||||||||||| | ||| || |||||| Sbjct 3913422 ACCAAGTGTAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCTTCC 3913481 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || || | |||| |||||||||||||| ||||| || |||||||| || | Sbjct 3913482 AGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCCGGAGGGATACCTTCTTTGTCCTGA 3913541 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || || | | || | || || | ||||| || |||| ||| | || || Sbjct 3913542 ATCTTGGCCTTGACGTTCTCGATCGTGTCAGAGGGCTCAACCTCGAGCGTGATGGTCTTG 3913601 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || || | || |||||||| Sbjct 3913602 CCAGTGAGGGTCTTGACAAAGATCTGCAT 3913630 >seq1 Length=9333084 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || || |||||||||||||||| ||| || ||||| ||||| || || | Sbjct 5359773 GATTCCTTCTGGATGTTGTAGTCGCTCAAGGTTCGTCCGTCTTCCAGCTGCTTGCCTGCG 5359832 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| ||||| || || || || || || ||||| || || || || ||| | Sbjct 5359833 AAGATGAGACGTTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGGATCTTAGCTTTGACG 5359892 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||| || | || ||||||||||| || | || || ||||| || || || Sbjct 5359893 TTCTCGATAGTGTCAGACGCCTCCACTTCGAGGGTGATTGTCTTTCCAGTGAGGGTCTTG 5359952 Query 132110 ATGAAAATCTGCATGACT 132127 | ||| ||||||||| || Sbjct 5359953 ACGAAGATCTGCATGCCT 5359970 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | |||||||| || ||||||||||| | ||| | |||||| Sbjct 5359986 ACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGATAGGGTCCTGCCATCTTCC 5360045 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 |||||||| |||| |||| |||||||| || || ||||| |||||||| ||||| Sbjct 5360046 AGCTGTTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTATC 5360101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610008472000