Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq18 114 2e-19 seq14 113 6e-19 seq2 113 6e-19 seq12 91.5 2e-12 >seq18 Length=652692 Score = 114 bits (126), Expect = 2e-19 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 1456085 ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGA 1456144 |||| ||| ||| | || ||| ||||||| ||| |||| ||||| ||||||||| ||| Sbjct 264138 ACCTGTTTAACGCTGTGGAGACGATGCCGTCTGTGCGGAAGAAGGCTGACTGGGCGCTGA 264079 Query 1456145 AGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCGGCTTTGCCGC-G 1456202 ||||||||| | | || ||| | | ||| || |||||| ||| || | | Sbjct 264078 GTTGGATCAACTCGTC---CAACGCCACCTACGGCGAACGCGTCGTCGCCTTCGCTTCCG 264022 Query 1456203 TCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCC 1456262 ||||||||||||| ||| ||| ||| | ||||||| |||||| || || || Sbjct 264021 TCGAGGGCATCTTCTTCAGTGGCTCCTTCGCCTCCATCTTCTGGCTCCGTAAACGAGGAA 263962 Query 1456263 TCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAGT 1456312 | ||||| |||| || ||| ||||||||| | |||||||||||||| || Sbjct 263961 TAATGCCTGGTC-TCACCTTCAGCAACGAACTCATCAGTCGCGACGAGGT 263913 >seq14 Length=1536585 Score = 113 bits (124), Expect = 6e-19 Identities = 201/288 (70%), Gaps = 4/288 (1%) Strand=Plus/Minus Query 1455785 ATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGA 1455844 |||||| | |||| | ||||||||| ||||||| || || || ||||| | | || Sbjct 516107 ATGTACAAGAAAG-CAACGGCCTCCTTCTGGACCGTGGAAGAAGTAGACCTGGCCAAAGA 516049 Query 1455845 CACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACG-TCCTCG 1455903 || || ||||| |||| ||||| || | | ||| ||| | || |||| | Sbjct 516048 CATGGAAGACTGGAACAGCCTGAATGACGAAGAACAGCTCTTCGTCA-GTACAATCCTGG 515990 Query 1455904 CCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAA 1455963 |||| || |||||| ||||| |||||||| ||| ||| | ||| || || | || Sbjct 515989 CCTTCTT-CGCCGCTAGCGACGGCATCGTCAACGAAAACTTAACCGAGCGGTTCTCGCAA 515931 Query 1455964 GAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATC 1456023 || ||||| | || || || || | || ||||| |||||||||||||| || || || Sbjct 515930 GAAGTCCAGATACCTGAAGCCCGCTCATTCTACGGCTTCCAGATCGCCATGGAGAATGTC 515871 Query 1456024 CACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || |||| ||| | ||||||||||| ||| |||| |||||| Sbjct 515870 CATTCGGAAATGTACAGCTTGCTGATCGACACGTACATCAAAGACCCG 515823 Score = 89.7 bits (98), Expect = 7e-12 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 1456173 TTTGCCGAGCGGCTCGTCGGCTTTGCCGCG-TCGAGGGCATCTTTTTCTCGGGCAGTTTC 1456231 |||| ||| || |||||| || |||||| | ||||||||||||||| || ||| Sbjct 515666 TTTGGCGAACGAGTCGTCGCGTTCGCCGCGGTTGAGGGCATCTTTTTCAGTGGGTCCTTC 515607 Query 1456232 TGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGA 1456291 ||||| || ||||||||||| || || |||||||| || ||| || |||||||| Sbjct 515606 GCGGCCATATTCTGGCTCAAGAAACGAGGGCTCATGCCAGG-CTTGACCTACAGCAACGA 515548 Query 1456292 ATTTATCAGTCGCGACGAAGT 1456312 | | || ||||||||||| || Sbjct 515547 ACTGATAAGTCGCGACGAGGT 515527 >seq2 Length=9028361 Score = 113 bits (124), Expect = 6e-19 Identities = 176/247 (71%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 ||||||||| | |||||||| || ||||||||||| |||||| || | | | | Sbjct 7596979 TCGTACTCGGTGTACATCTACAAAGTCCTCAAGCAGGTCCACCCCGACACTG--GCGTC- 7597035 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 |||||||| || ||||| | ||||||||||| || |||||||| || | || |||||| Sbjct 7597036 TCCTCCAA--AG-CCATGGCCATCATGAACTCCTTCGTCAACGATATCTTTGAGCGCATC 7597092 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | || ||| || || | | | ||||||| || ||| | |||||| Sbjct 7597093 GCCGGAGAAGCCTCGCGTCTATCCCAGTACAACAAGAAATCTACCATCACTTCCCGCGAG 7597152 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 |||||||| || || || || | ||| || || ||||||| |||||||||||| || Sbjct 7597153 ATCCAGACAGCTGTTCGTCTCTTGCTGCCTGGAGAGCTGGCCAAGCACGCCGTCTCGGAA 7597212 Query 725136 GGCACCA 725142 ||||||| Sbjct 7597213 GGCACCA 7597219 Score = 89.7 bits (98), Expect = 7e-12 Identities = 125/173 (72%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 2133579 GATATTGACTTTTTCTCCATGTGCGAGCACCACCTGCTGCCCTTTATCGGCAAGGCCCAC 2133638 ||||| || | ||||| ||||||||||| ||| || | || || |||| || | |||| Sbjct 4452478 GATATCGAAGTCTTCTCAATGTGCGAGCATCACATGGTTCCTTTCTTCGGGAAAGTCCAC 4452537 Query 2133639 GTGGGCTACCTGCCCGCGGGCAAGATCATCGGTCTGAGCAAGATCCCGCGCATCGTCGAC 2133698 || |||||||| || ||| | |||| || ||||||||||| | || |||||||| Sbjct 4452538 GTTGGCTACCTCCCTAAAGGCCAAGTCATTGGCTTGAGCAAGATCGCCCGGATCGTCGAA 4452597 Query 2133699 ATGTT-TTCCGACCGCTTCCAAGTACAGGAGGCACTCACGCGCCAGATCGCCG 2133750 || || ||| || ||||||||||||| || || |||||||||| Sbjct 4452598 ATCTTCAGTCGA-CGTCTCCAAGTACAGGAACGTCTGACAAAACAGATCGCCG 4452649 >seq12 Length=1744794 Score = 91.5 bits (100), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| || |||||||| |||||| || | || ||||| ||| || Sbjct 271003 ATCTACAAGGTACTGAAGCAGGTCCACCCCGACACTGGTGTCTCATCCA-----AAG-CC 271056 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| | ||||||||||| || |||||||| || |||| ||||||| ||| ||| | Sbjct 271057 ATGGCCATCATGAACTCCTTCGTCAACGATATCTTCGAGCGCATCGCTGGCGAAGCCTCT 271116 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| | | | |||||| || ||| | |||||||| ||||| ||||| Sbjct 271117 CGCCTCTCCCAATACAACAAAAAGTCTACCATCACTTCTCGCGAGATTCAGACTGCCGTT 271176 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || | | | || || |||||| |||||| || || || || |||| Sbjct 271177 CGTCTCCTTCTCCCTGGTGAGTTGGCCAAGCACGCAGTGTCGGAAGGAACCA 271228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177791909632400