Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1 114 1e-20 seq2 105 6e-18 >seq1 Length=9333084 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568 ||||||||| | | | || ||||| | ||| |||||| || |||||||| || | Sbjct 5359511 TCCACCACGAAGACGGAGGACTAAATGAAGAGTAGACTCCTTCTGTATGTTGTAGTCAGA 5359570 Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 | ||| || | || |||||||| ||||||||||| |||| || || || |||| ||| Sbjct 5359571 AAGGGTGCGTCCATCCTCCAGCTGTTTACCCGCAAAGATCAGACGTTGTTGATCCGGAGG 5359630 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | || ||||||||| ||||| ||| | | | | ||||| | ||| || Sbjct 5359631 GATGCCTTCCTTGTCCTGAATCTTGGCCTTGACGTTCTCGATGGTGTCAGAAGCTTCGAC 5359690 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| |||||| ||||| |||||||| || || || || |||||||| Sbjct 5359691 CTCCAGCGTGATGGTTTTGCCCGTCAAGGTCTTGACGAAGATCTGCAT 5359738 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | | ||| | | || |||||||| || || || || Sbjct 5360003 CTCTTTCTGGATGTTGTAGTCAGATAGGGTCCTGCCATCTTCCAGCTGTTTGCCGGCGAA 5360062 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||||| ||||| || ||||| ||| |||||| ||| | | | Sbjct 5360063 GATCAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATT 5360122 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| | ||||||||||| ||||| || || || ||||| || || || Sbjct 5360123 CTCGATCGTGTCCGAGGCTTCCACCTCCAAAGTGATGGTCTTGCCAGTCAACGTCTTGAC 5360182 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 5360183 GAAGATCTGCAT 5360194 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| ||| ||||||||| |||| ||||||||||| || || || Sbjct 5359776 TCCTTCTGGATGTTGTAGTCGCTCAAGGTTCGTCCGTCTTCCAGCTGCTTGCCTGCGAAG 5359835 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | || |||||||||| |||| | ||||||||| |||| || |||| ||| Sbjct 5359836 ATGAGACGTTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGGATC-TTAGCTTTGACGTT 5359894 Query 35666 -GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || ||||| || | ||||| || || || || | || || || Sbjct 5359895 CTCGATAGTGTCAGACGCCTCCACTTCGAGGGTGATTGTCTTTCCAGTGAGGGTCTTGAC 5359954 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 5359955 GAAGATCTGCAT 5359966 >seq2 Length=9028361 Score = 105 bits (116), Expect = 6e-18 Identities = 200/290 (69%), Gaps = 6/290 (2%) Strand=Plus/Minus Query 44130 TTGTGGAACGCTGCCCAAACACAACTGTTGCGAGAAGGTAAAATGCACCAATACATGCGT 44189 ||||||||||| || || | || || ||||||||||| || | |||||| Sbjct 7730689 TTGTGGAACGCCGCGCAGATGCAGATGAACAGAGAAGGTAAATGTCATGGTTTCATGCGC 7730630 Query 44190 ATGTATTGGTGCAAGAAGATATTGGAGTGGTCGGAAGATGCGCAAACCGCGCTCG--TTC 44247 ||||| ||| ||||||||| | |||||| |||| | | ||| ||||| | ||| Sbjct 7730629 ATGTACTGGGCCAAGAAGATCCTTGAGTGGACGGAGAACCCACAACAGGCGCTGGAGTTC 7730570 Query 44248 ATGCCATCTATCTGAACGACAAGTACAGTTTGGACGGTCGCGACCCCAACGGGTACGTAG 44307 |||| | |||| || ||||| || ||||| || || ||||| || || || || | Sbjct 7730569 T--CCATAAAGTTGAATGATAAGTATAGCTTGGATGGACGAGACCCGAATGGCTATGTGG 7730512 Query 44308 GATGTATGTGGTCCATTTGCGGTGTCCACGA-CAGGGCGTGGCGAGAGCTACCCATCTAC 44366 |||| ||||||||||| || || || || |||||| ||| ||| | | | | Sbjct 7730511 GATGCATGTGGTCCATCTGTGGAACACATGACCAGGGC-TGGGCAGAACGAGAGGTGTTT 7730453 Query 44367 GGCAAAGTGCGCTACATGAACTACAACGGTTGCGTCAGAAAGTTTGATGT 44416 || || | ||||| |||||||| || || || |||||||||||||| Sbjct 7730452 GGAAAGATTCGCTATATGAACTATAATGGATGTAAGAGAAAGTTTGATGT 7730403 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || || ||||| || | || |||||| | || ||||||||||| || ||||| Sbjct 3913211 CTCTTTCTGGATATTGTAGTCAGACAGGGTTCGGCCATCTTCCAGCTGCTTTCCGGCAAA 3913270 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAG 35663 || | || ||||| |||| ||||| || ||||||| | ||| ||| | ||| | | Sbjct 3913271 GATGAGACGTTGCTGATCCGGAGGAATGCCTTCCTTGT-CTTGAATTTTGGCCTTGACAT 3913329 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | | ||||| | |||||| || | ||||| || || ||||| | || || | Sbjct 3913330 TCTCGATAGTGTCTGAAGGTTCCACTTCGAGGGTGATTGTCTTTCCCGTTAGCGTCTTGA 3913389 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 3913390 CGAAAATCTGCAT 3913402 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| |||| || ||| || || |||||||| |||| | |||||| | || ||| Sbjct 3913422 ACCAAGTGTAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCTTCC 3913481 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 |||||||| || || || |||| ||||| || |||| ||| | | || |||||| Sbjct 3913482 AGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCCGGAGGGATACCTTCTTTGTCCTGA 3913541 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 ||||| ||| | | | | |||||| | || ||||| | |||||| || || Sbjct 3913542 ATCTTGGCCTTGACGTTCTCGATCGTGTCAGAGGGCTCAACCTCGAGCGTGATGGTCTTG 3913601 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || | || || ||||| |||||||| Sbjct 3913602 CCAGTGAGGGTCTTGACAAAGATCTGCAT 3913630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450792473016000