Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2 105 9e-18 seq14 86.0 9e-12 >seq2 Length=9028361 Score = 105 bits (116), Expect = 9e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 ||||||||||||||||||| || || || || | | | | || ||||| || || || | Sbjct 7429923 TCCATCCGTAGAAATGCATGCTAGTCAGCTTCGCAAAGTTCGGTTCGGCAATGTGGATGT 7429982 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 ||| || ||||| || |||||| ||||| | ||| |||||||| || ||||| |||| Sbjct 7429983 TCAAGGACTGACTCTGGCAGATGAAGGCTCCACGATCCGCCGCCATCTTGATAATGCTCT 7430042 Query 68561 TTTGAGGAATTTCCCA 68576 | || ||||||||||| Sbjct 7430043 TCTGCGGAATTTCCCA 7430058 >seq14 Length=1536585 Score = 86.0 bits (94), Expect = 9e-12 Identities = 144/208 (69%), Gaps = 3/208 (1%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||| || | ||| || | |||||| | || | || ||||| || || || || | Sbjct 515528 CCTCGTCGCGACTTATCAGTTCGTTGCTGTAGGTCAAGCCTGGCATGAGCCCTCGTTTCT 515587 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| |||||||| || || || ||| || |||||||| || || || || || | Sbjct 515588 TGAGCCAGAATATGGCCGCGAAGGACCCACTGAAAAAGATGCCCTCAACCGCGGCGAACG 515647 Query 39759 CAACAAGTCTCTCTCCGTAACTTGTATCATTATGT---ATCCACTTCTGTGCCCAATCAG 39815 | || | || || || || || ||| ||| |||||| | |||||||| | Sbjct 515648 CGACGACTCGTTCGCCAAAAGATGCTTCACTATTCGAGATCCACCGAAGCGCCCAATCCG 515707 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTC 39843 |||||||||| |||| ||||| ||||| Sbjct 515708 CTTTCTTCTTCACACTCGGCATGGTTTC 515735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686907082728000