Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq14 122 7e-23 >seq14 Length=1536585 Score = 122 bits (134), Expect = 7e-23 Identities = 200/286 (70%), Gaps = 2/286 (1%) Strand=Plus/Minus Query 43735 GCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAA 43794 ||| |||||||| |||||| ||| || || ||||| | |||||||| || || | || Sbjct 516111 GCAGATGTACAAGAAAGCAACGGCCTCCTTCTGGACCGTGGAAGAAGTAGACCTGGCCAA 516052 Query 43795 AGACTTAGCACATTGGATT-GCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTT 43853 |||| | | | | |||| || | || | ||||| | | || | | | Sbjct 516051 AGACATGGAAGACTGGAACAGCCTGAATGACG-AAGAACAGCTCTTCGTCAGTACAATCC 515993 Query 43854 TGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGC 43913 |||| || || || || |||||||| || ||||| ||||| || ||||| ||| Sbjct 515992 TGGCCTTCTTCGCCGCTAGCGACGGCATCGTCAACGAAAACTTAACCGAGCGGTTCTCGC 515933 Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 ||||||| || |||| ||||| || | || || || || || || ||||| || ||| Sbjct 515932 AAGAAGTCCAGATACCTGAAGCCCGCTCATTCTACGGCTTCCAGATCGCCATGGAGAATG 515873 Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 | ||||||||||||||||| | ||||| || |||||||||||||| Sbjct 515872 TCCATTCGGAAATGTACAGCTTGCTGATCGACACGTACATCAAAGA 515827 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/112 (78%), Gaps = 4/112 (4%) Strand=Plus/Minus Query 44117 TCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAG--GAT 44174 |||||||| |||||| | |||||||| || | || || ||||| || |||||| | | Sbjct 515669 TCTTTTGGCGAACGAGTCGTCGCGTTCGCCGCGGTTGAGGGCATCTT--TTTCAGTGGGT 515612 Query 44175 CGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGAC 44226 | || ||||||||||| ||| | ||||||||||| | ||||| || ||||| Sbjct 515611 CCTTCGCGGCCATATTCTGGCTCAAGAAACGAGGGCTCATGCCAGGCTTGAC 515560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455031201000