Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2 194 5e-44 seq1 140 1e-27 seq5 100 9e-16 seq8 91.5 4e-13 seq9 84.2 7e-11 >seq2 Length=9028361 Score = 194 bits (214), Expect = 5e-44 Identities = 184/235 (78%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| || || || | | || || |||||||| || |||||||| || ||||| | Sbjct 3913168 TTTGCATCCCTCCTCGCAGACGCAGGACGAGATGAAGGGTCGACTCTTTCTGGATATTGT 3913227 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | ||||| | ||||| |||||||| || || ||||| |||||||| ||||||||||||| Sbjct 3913228 AGTCAGACAGGGTTCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATGAGACGTTGCTGAT 3913287 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | |||||||| ||||| || || |||||||| || || ||||| || || | || || | Sbjct 3913288 CCGGAGGAATGCCTTCCTTGTCTTGAATTTTGGCCTTGACATTCTCGATAGTGTCTGAAG 3913347 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||| ||||| || || | ||||||||| ||||| || || || ||||||||||| Sbjct 3913348 GTTCCACTTCGAGGGTGATTGTCTTTCCCGTTAGCGTCTTGACGAAAATCTGCAT 3913402 Score = 96.9 bits (106), Expect = 1e-14 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || |||||||| ||||| ||||| ||||| ||||| || || | ||| |||||||| || Sbjct 4632524 ATACCTTCTTTGTCCTGGATTTTGGCTTTCACATTTTCGATGGTATCCGATGGTTCGACC 4632465 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || | ||||||||||| || || || ||||| ||||||||| Sbjct 4632464 TCGAGCGTGATGGTCTTTCCGGTGAGGGTCTTCACAAAGATCTGCATT 4632417 >seq1 Length=9333084 Score = 140 bits (154), Expect = 1e-27 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | || || | ||||||||||||||| || || || || || ||||| Sbjct 5359512 CCACCACGAAGACGGAGGACTAAATGAAGAGTAGACTCCTTCTGTATGTTGTAGTCAGAA 5359571 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || ||||| || || ||||| || |||||||| |||||||| ||||| ||||| Sbjct 5359572 AGGGTGCGTCCATCCTCCAGCTGTTTACCCGCAAAGATCAGACGTTGTTGATCCGGAGGG 5359631 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || ||||| || |||||||| || || || || || || || | ||||| | ||| || Sbjct 5359632 ATGCCTTCCTTGTCCTGAATCTTGGCCTTGACGTTCTCGATGGTGTCAGAAGCTTCGACC 5359691 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | || || || || | || || || || |||||||| Sbjct 5359692 TCCAGCGTGATGGTTTTGCCCGTCAAGGTCTTGACGAAGATCTGCAT 5359738 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | || ||||| || || || || || || || || || || || Sbjct 5359736 CATACCACCTCGAAGACGGAGGACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTC 5359795 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || ||||| || ||||| || || || || || ||||| ||||||||||| || || Sbjct 5359796 GCTCAAGGTTCGTCCGTCTTCCAGCTGCTTGCCTGCGAAGATGAGACGTTGCTGGTCCGG 5359855 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| ||||| || ||||| || |||||||| || || || || | ||||| | || Sbjct 5359856 TGGAATCCCTTCCTTGTCCTGGATCTTAGCTTTGACGTTCTCGATAGTGTCAGACGCCTC 5359915 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || | ||||||||| || || || || || || |||||||| Sbjct 5359916 CACTTCGAGGGTGATTGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 5359966 Score = 95.1 bits (104), Expect = 4e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || ||||||||||| |||||||| || || ||||| || || Sbjct 1625411 ACCACCACGGAGGCGCAGGACGAGATGAAGAGTCGACTCTTTCTGGATGTTATAGTCTGA 1625470 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | ||| | |||||||| || || ||||| || ||||| | ||| || ||||| ||||| Sbjct 1625471 CAGTGTCCTGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGTTGATCCGGAGG 1625530 Query 140630 AATTCCT 140636 || ||| Sbjct 1625531 GATACCT 1625537 >seq5 Length=3294854 Score = 100 bits (110), Expect = 9e-16 Identities = 387/599 (65%), Gaps = 18/599 (3%) Strand=Plus/Plus Query 349250 AATGATCGTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTT 349309 |||| ||| || ||||| || || ||||| ||||| ||| | | || || || |||||| Sbjct 683432 AATGGTCGCGTGGAAATTATCGCCAATGACCAAGGAAACCGCATCACCCCGTCCTACGTT 683491 Query 349310 GCATTTAC---CGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTG-CTGC 349365 || ||||| |||| || ||| | | || ||| |||| || ||||| |||| || | Sbjct 683492 GCCTTTACTAGCGAAGGAGAACGTCTAGTGGGAGATGCTGCCAAGAATCA-GCTGACTTC 683550 Query 349366 TAATCCAAAAAATACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAA 349425 || ||| | || || |||||||| | ||||| | || ||| | | ||| | Sbjct 683551 CAACCCAGAGAACACCGTTTTTGACGTGAAGCGGTTGATCGGTCGCGAATGGAACGACCA 683610 Query 349426 ATCTACACAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAA 349485 | || |||| | ||||| | || || | || || ||| | | |||| ||| Sbjct 683611 GAGTGTGCAGGCTGACATCAAACACTACCCCTTCAAGGTGGT--CAACAAA-GGTGGTAA 683667 Query 349486 ACCAATTATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCC--GAAGAAATT 349543 || | | || || | | || | ||| || | | || |||| |||||||| Sbjct 683668 GCCTAACGTGGAAGT-GTCCGTGTCGGGCAGCAAGAA-AGTCTTCACCCCCGAAGAAATC 683725 Query 349544 TCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTA 349603 | ||| | | | || |||||||| | || || || ||| | ||| | | || Sbjct 683726 AGCGCCATGATCCTGGGGAAGATGAAGGAGGTGGCCGAGGCTTATCTGGGTAAGGCTGTG 683785 Query 349604 ACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAA 349663 || | || || | || || || ||||| ||||| || || |||||| |||| || || Sbjct 683786 ACCCACGCCGTCGTCACCGTCCCTGCCTACTTTAACGACGCACAGCGTGCTGCCACCAAG 683845 Query 349664 GATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCA 349723 || || || | |||| | || | | || | |||| || || |||||||| ||||| Sbjct 683846 GACGCCGGTACCATTTCTGGCCTGCAGATTATGCGAATCATCAACGAACCCACCGCTGCC 683905 Query 349724 GCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGAT 349783 || || || || || | || || | | | ||| || ||||| || | |||||| Sbjct 683906 GCTATCGCTTACGGTTTGGACAAGAAGGG------AGAGAAGAATATCCTGGTCTTTGAT 683959 Query 349784 TTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGT 349842 || ||||||||||| || || || || || || || | || | || | |||||||| Sbjct 683960 TTGGGTGGTGGTACCTTCGACGTGTCGCTTCTGACCATCGATAACGGCGTCTTTGAAGT 684018 >seq8 Length=2054787 Score = 91.5 bits (100), Expect = 4e-13 Identities = 244/369 (66%), Gaps = 8/369 (2%) Strand=Plus/Minus Query 349959 GAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTA 350018 ||||| | || || || | || || |||||||| || || || |||| || || | | Sbjct 9548 GAGCACTCCGCCGTCTGCGCACAGCTTGTGAACGAGCCAAACGCACCTTGTCCTCGAGCA 9489 Query 350019 CCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTA--T 350076 | || |||| | || |||||||||||| ||| || || |||| || | | | Sbjct 9488 CAGAAGCCTCCCTGGAGATTGATTCTCTTCATGAAGGTGTGGACTTCTA--CAGCAAGAT 9431 Query 350077 TACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGT 350136 || || ||||| ||||||||| | || ||||| || | | ||| || | || || Sbjct 9430 CACCCGAGCTCGCTTTGAAGAACTGTGCTCCGATCTCTTCCGCGGAACTCTGCAGCCCGT 9371 Query 350137 GGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGT 350196 || |||| | | ||| || || || ||||| | || | ||| | || |||| Sbjct 9370 TGAGAAAGCCCTGACAGACGCCAAGATCTCCAAGTCCGACATCCAAGAAATTGTCCTAGT 9311 Query 350197 TGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAA 350256 |||||| || ||||| || ||||| || || | || || || || || || || Sbjct 9310 TGGTGGCAGCACTCGTATCCCCAAAGTCCAGAAGCTGCTGAAGGATTTCTTCAACGGTAA 9251 Query 350257 AGAACCTTCTA--GATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAG 350314 ||| | || | | || || || ||||||||||| || || ||||| || ||||| || Sbjct 9250 AGAGC--TCAACGGTTCCATCAACCCAGATGAAGCCGTCGCGTATGGAGCCGCTGTCCAA 9193 Query 350315 GCATCTATT 350323 ||| | ||| Sbjct 9192 GCAGCCATT 9184 >seq9 Length=1903873 Score = 84.2 bits (92), Expect = 7e-11 Identities = 197/291 (68%), Gaps = 11/291 (4%) Strand=Plus/Plus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || ||||| || || || || || || || ||| | || ||| || || ||||| || Sbjct 1705183 GCCGTTATCACAGTTCCTGCTTACTTCAACGATTCACAACGTCAAGCGACGAAAGACGCC 1705242 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || | ||||| || || ||||| || | || || || ||||| || ||||| || | Sbjct 1705243 GGGAAGATTGCCGGCTTGAATGTGCTGCGCATCATCAACGAACCGACGGCTGCCGCTCTG 1705302 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAG---aaaaaaaTATTCTTATTTTTGATTTA 349786 || ||||| || || || | || ||| ||| || | || || || || || || || Sbjct 1705303 GCCTATGGACTGGACAAGAAGA-TGA--AAGGCGAACAGAACATCCTCATCTTCGACTTG 1705359 Query 349787 GGTGGTGGTACTTTTGATGT-ATCACTACTAACACTTGAAGAGGGA---ATTTTTGAAGT 349842 || ||||| || || || || | || | | || | |||||| || |||||||| Sbjct 1705360 GGCGGTGGCACCTTCGACGTTAGCA-TCTTGACCGTCTCAGAGGGCTCCATGTTTGAAGT 1705418 Query 349843 TAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCG 349893 | | || |||||||| || ||| | || || ||||||||||| || || Sbjct 1705419 TCGCTCCACAGCTGGTGACACCCATTTGGGCGGTGAAGATTTTGACAACCG 1705469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515250517160600