Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2 111 2e-19 seq14 91.5 2e-13 >seq2 Length=9028361 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 79315 ACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCA 79374 || || | ||| || |||| ||||| |||||||||| |||||| ||| || || Sbjct 7431689 ACGTCCGACAGTCCGGGGCTTTCGTGTGGGCACATCAAACACCAGTCGCCGTTCTCCTGG 7431748 Query 79375 ACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATC 79434 || |||||||||||| |||||||||| |||| ||||| || ||| || | Sbjct 7431749 ACGCGACGCATGAAGAGGTCGGGGATCCACAAGGCCAGAAAGAGATCTCGGGCTCGTTGC 7431808 Query 79435 TCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGC 79494 |||||| || |||| ||||| || |||||||| | || ||||||||||||||| Sbjct 7431809 TCCTCGGACCCGGTGTTCTTCCGCAGTTCCAGAAAGTCGAAGACATCGGCGTGCCACGGC 7431868 Query 79495 TCCAGATAGATGGCGAACGAACCC 79518 |||| ||||| ||||| | |||| Sbjct 7431869 TCCAAGTAGATAGCGAAGGCACCC 7431892 Score = 100 bits (110), Expect = 3e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 19493 TTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTG 19552 ||||| |||||| | ||||| |||||||| || ||| | || || || |||||||| | Sbjct 7431885 TTCGCTATCTACTTGGAGCCGTGGCACGCCGATGTCTTCGACTTTCTGGAACTGCGGAAG 7431826 Query 19553 AAC-CAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGA 19611 ||| | |||| ||||||| || || || ||||| |||||||||||| || || Sbjct 7431825 AACACCGGGTC-CGAGGAGCAACGAGCCCGAGATCTCTTTCTGGCCTTGTGGATCCCCGA 7431767 Query 19612 CCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGCCCGCACGAATG 19671 ||| |||||| || || || ||| || ||| |||||||||| |||||| | Sbjct 7431766 CCTCTTCATGCGTCGCGTCCAGGAGAACGGCGACTGGTGTTTGATGTGCCCACACGAAAG 7431707 Query 19672 CCCTGGCCTACCCGACGTCTACGGCGAGGCGTTC 19705 ||| || || | ||||| | ||||| | |||| Sbjct 7431706 CCCCGGACTGTCGGACGTTTGGGGCGAAGAGTTC 7431673 Score = 86.0 bits (94), Expect = 7e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 20630 TACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGGCCGATCGCGGC 20689 ||| | || || |||||||| || ||||||||||| ||| | |||||||| ||||| || Sbjct 7430070 TACCGCACAGTCTGGGAAATTCCGCAGAAGAGCATTATCAAGATGGCGGCGGATCGTGGA 7430011 Query 20690 GCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGAGCCTGGCGAAG 20749 |||| |||| |||| ||||| | || || ||| | | |||| | | |||||| Sbjct 7430010 GCCTTCATCTGCCAGAGTCAGTCCTTGAACATCCACATTGCCGAACCGAACTTTGCGAAG 7429951 Query 20750 CTGAGCTCCATGCATATGTACGGCTGG 20776 |||| ||||||| | ||||| ||| Sbjct 7429950 CTGACTAGCATGCATTTCTACGGATGG 7429924 >seq14 Length=1536585 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||| |||||||| | | || |||||| |||| || || | ||||| ||| |||| Sbjct 516106 TGTACAAGAAAGCAACGGCCTCCTTCTGGACCGTGGAAGAAGTAGACCTGGCCAAAGACA 516047 Query 59653 TGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCT 59712 || | || ||| ||| || ||| |||| || |||| ||| ||| | ||||||||| Sbjct 516046 TGGAAGACTGGAACAGCCTGAATGACGAAGAACAGCTCTTCGTCAGTACAATCCTGGCCT 515987 Query 59713 TCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATG 59772 ||||||| || || || || || || | ||||| || | | || || | || | Sbjct 515986 TCTTCGCCGCTAGCGACGGCATCGTCAACGAAAACTTAACCGAGCGGTTCTCGCAAGAAG 515927 Query 59773 TCCAGATTGCCGAGGCCCGGTCGTTCTACG 59802 ||||||| | || ||||| || ||||||| Sbjct 515926 TCCAGATACCTGAAGCCCGCTCATTCTACG 515897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548523428688000