Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2 82.4 8e-11 >seq2 Length=9028361 Score = 82.4 bits (90), Expect = 8e-11 Identities = 133/189 (70%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 53570 TTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTG 53629 ||||| |||||| | ||||||||||||||||| | | || ||||| || ||||| | Sbjct 7431885 TTCGCTATCTACTTGGAGCCGTGGCACGCCGATGTCTTCGACTTTCTGGAACTGCGGAAG 7431826 Query 53630 AA-TCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGA 53688 || | |||| ||| ||| || ||| || || ||| || ||||||| || || Sbjct 7431825 AACACCGGGT-CCGAGGAGCAACGAGCCCGAGATCTCTTTCTGGCCTTGTGGATCCCCGA 7431767 Query 53689 CCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTG 53748 ||||||||||| || || || ||| || |||| |||||||||| |||| | Sbjct 7431766 CCTCTTCATGCGTCGCGTCCAGGAGAACGGCGACTGGTGTTTGATGTGCCCACACGAAAG 7431707 Query 53749 CCCCGGCCT 53757 |||||| || Sbjct 7431706 CCCCGGACT 7431698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214631960000