Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1 154 2e-32 seq2 149 7e-31 >seq1 Length=9333084 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || ||||| || || || || ||||| || | | Sbjct 5359738 ATGCAGATCTTCGTCAAGACCTTGACGGGCAAAACCATCACGCTGGAGGTCGAAGCTTCT 5359679 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || |||||||||||||| || || ||||| || || Sbjct 5359678 GACACCATCGAGAACGTCAAGGCCAAGATTCAGGACAAGGAAGGCATCCCTCCGGATCAA 5359619 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || ||||| ||||| || || ||||||| || ||||| | ||||| || Sbjct 5359618 CAACGTCTGATCTTTGCGGGTAAACAGCTGGAGGATGGACGCACCCTTTCTGACTACAAC 5359559 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || ||||| || ||||||||| ||||| | |||||||| |||||| Sbjct 5359558 ATACAGAAGGAGTCTACTCTTCATTTAGTCCTCCGTCTTCGTGGTGGA 5359511 Score = 134 bits (148), Expect = 2e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || ||||| || || || || || ||| | | Sbjct 5359966 ATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACAATCACCCTCGAAGTGGAGGCGTCT 5359907 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | || ||||| || ||||||||||| || ||||| || |||||| Sbjct 5359906 GACACTATCGAGAACGTCAAAGCTAAGATCCAGGACAAGGAAGGGATTCCACCGGACCAG 5359847 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 || ||||| || || || || ||||| || || || | || ||| | ||| ||||| || Sbjct 5359846 CAACGTCTCATCTTCGCAGGCAAGCAGCTGGAAGACGGACGAACCTTGAGC-GACTACAA 5359788 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| || || || || ||| | |||||||| ||||| Sbjct 5359787 CATCCAGAAGGAATCGACCCTCCACCTTGTCCTCCGTCTTCGAGGTGG 5359740 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||||||| | || |||||||| || ||| | ||||| || | Sbjct 5360194 ATGCAGATCTTCGTCAAGACGTTGACTGGCAAGACCATCACTTTGGAGGTGGAAGCCTCG 5360135 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| || || ||||| ||||| || |||||||| |||||| Sbjct 5360134 GACACGATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCGGACCAG 5360075 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || || || || || |||| | |||||| | ||||| || Sbjct 5360074 CAGCGTCTGATCTTCGCCGGCAAACAGCTGGAAGATGGCAGGACCCTATCTGACTACAAC 5360015 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| ||||| | ||| | ||||| || || || Sbjct 5360014 ATCCAGAAAGAGTCCACCCTTCACTTGGTCCTTCGTCTCCGTGGAGG 5359968 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || ||||| || || |||||| | || || || || ||||| || || |||| | Sbjct 1625536 GGTATCCCTCCGGATCAACAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCAGG 1625477 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || |||||||||| |||| || || || ||||||||||| ||| |||| || || Sbjct 1625476 ACACTGTCAGACTATAACATCCAGAAAGAGTCGACTCTTCATCTCGTCCTGCGCCTCCGT 1625417 Query 27628 GGTGG 27632 ||||| Sbjct 1625416 GGTGG 1625412 >seq2 Length=9028361 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || ||||||||||| || || ||||| || || || || || || | Sbjct 3913402 ATGCAGATTTTCGTCAAGACGCTAACGGGAAAGACAATCACCCTCGAAGTGGAACCTTCA 3913343 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| |||||||| |||||||| || |||||||| || ||| Sbjct 3913342 GACACTATCGAGAATGTCAAGGCCAAAATTCAAGACAAGGAAGGCATTCCTCCGGATCAG 3913283 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || ||||| || ||||| || || |||| || ||||| | ||||| ||| Sbjct 3913282 CAACGTCTCATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGAACCCTGTCTGACTACAAT 3913223 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || || || |||||||| ||| ||||||| || || || Sbjct 3913222 ATCCAGAAAGAGTCGACCCTTCATCTCGTCCTGCGTCTGCGAGGAGG 3913176 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || |||||||| || || || ||||||||| | | Sbjct 3913630 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACGCTCGAGGTTGAGCCCTCT 3913571 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || ||||||||||| || || || ||||| || || Sbjct 3913570 GACACGATCGAGAACGTCAAGGCCAAGATTCAGGACAAAGAAGGTATCCCTCCGGATCAA 3913511 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| || || |||| || ||||| | ||||| || Sbjct 3913510 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGAACCCTCTCCGACTACAAC 3913451 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || || || || || | ||| | ||||| || || || Sbjct 3913450 ATCCAGAAAGAGTCGACCCTACACTTGGTCCTCCGTCTCCGTGGAGG 3913404 Score = 111 bits (122), Expect = 2e-19 Identities = 167/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || |||||||| || || | || || || | Sbjct 3913174 ATGCAAATCTTCGTCAAGACACTGACAGGCAAGACCATCACCTTGGAAGTGGAACCTTCG 3913115 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | || || || ||||| || ||||| || || ||||| |||||| Sbjct 3913114 GATACCATTGAGAATGTCAAAGCCAAGATTCAAGATAAGGAAGGTATCCCTCCGGACCAG 3913055 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 || || | || || ||||| ||||| || || || | | || || ||| |||||||| Sbjct 3913054 CAACGCTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGAAGGACACTCAGC-GACTATAA 3912996 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGTT 27639 | || || || || ||||| || | || | || || || |||||| | ||| Sbjct 3912995 CATTCAGAAAGAGTCGACTCTCCACTTGGTACTTCGCCTGCGTGGTGGATAGGTT 3912941 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/149 (75%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 80075 TCCAGCCGTACAGGTGCATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCA-TGAAGATG 80133 |||| ||||| | ||||| | | |||||||||| || ||||| || || |||| Sbjct 7429923 TCCATCCGTAGAAATGCATGCTAGTCAGCTTCGCAAA-GTTCGGTTCGGCAATGTGGATG 7429981 Query 80134 TTCAGAGACTGAGACTGACAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGAC 80193 |||| |||||| ||| |||||||| || |||||||| |||||||| | ||||| | Sbjct 7429982 TTCAAGGACTGACTCTGGCAGATGAAGGCTCCACGATCCGCCGCCATCTTGATAATGCTC 7430041 Query 80194 TTTTGTGGAATTTCCCATACTGTACGATA 80222 || || ||||||||||| ||||| || || Sbjct 7430042 TTCTGCGGAATTTCCCAGACTGTGCGGTA 7430070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570308974224000