Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq4 96.9 3e-15 >seq4 Length=4740345 Score = 96.9 bits (106), Expect = 3e-15 Identities = 78/92 (85%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 30012 CCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACT 30071 |||| ||| ||||||||||||| | |||||||||||| |||||||| ||||| |||| Sbjct 2915878 CCATATCCGCCGACCTCTGGTACATCTGACACGAGAGTCCTCCGTCGGATACGTAGAACT 2915937 Query 30072 GACAC-ATGGCGTGGCACGGAGGAAGAGCCAT 30102 | ||| | |||||| ||||||||||||||||| Sbjct 2915938 G-CACTAGGGCGTGACACGGAGGAAGAGCCAT 2915968 Score = 87.8 bits (96), Expect = 1e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 29893 CAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGAC 29952 |||||||| ||| || || ||||| |||||| || ||| ||||| || || ||||| Sbjct 2915683 CAGGTAGATGTGCGCATCACCCAGCGTGTGGATGAATTCTGCCGGTCTCAGACCCGTGAC 2915742 Query 29953 GTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCC 30012 || || |||||||| || | || ||||||||||| ||||| || || ||||| || || Sbjct 2915743 ATGCGCGATCATGTAGGTTAAAAGCGAGTAGCTGGCAATGTTGAACGGAACCCCAAGACC 2915802 Query 30013 C 30013 | Sbjct 2915803 C 2915803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406309409618400