Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2 145 7e-30 seq1 134 1e-26 >seq2 Length=9028361 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || || || || || || || || Sbjct 3913630 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACGCTCGAGGTTGAGCCCTCT 3913571 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| ||||| || ||||| ||||||||||| || || || |||||| Sbjct 3913570 GACACGATCGAGAACGTCAAGGCCAAGATTCAGGACAAAGAAGGTATCCCTCCGGATCAA 3913511 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || ||||||| | ||| | ||||| |||||| Sbjct 3913510 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGAACCCTCTCCGACTACAAC 3913451 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||||||| |||| ||||| | ||| | || || || || Sbjct 3913450 ATCCAGAAAGAGTCGACCCTACACTTGGTCCTCCGTCTCCGTGGAGGTAT 3913401 Score = 143 bits (158), Expect = 2e-29 Identities = 204/287 (71%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 135473 TTGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGC 135532 ||||||||||| || || |||| | || ||||||| ||| || || || |||||| Sbjct 7730689 TTGTGGAACGCCGCGCAGATGCAGATGAACAGAGAAGGTAAATGTCATGGTTTCATGCGC 7730630 Query 135533 ATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACAC 135592 ||||| ||||| || ||||| | || ||| | | || | ||||||| | | Sbjct 7730629 ATGTACTGGGCCAAGAAGATCCTTGAGTGGACGGAGAACCCACAACAGGCGCTGGAGTTC 7730570 Query 135593 GCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGT 135652 | ||| || |||||| | || || || |||||||| || | |||||||| || || Sbjct 7730569 TCCATAAAGTTGAATGATAAGTATAGCTTGGATGGACGAGACCCGAATGGCTATGTGGGA 7730510 Query 135653 TGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTTTGGC 135712 || |||||||| || || || ||| || || || ||| || || | |||||||| Sbjct 7730509 TGCATGTGGTCCATCTGTGGAACACATGACCAGGGCTGGGCAGAACGAGAGGTGTTTGGA 7730450 Query 135713 AAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGT 135759 ||||||||||||||||||||| | || |||| ||||| ||| |||| Sbjct 7730449 AAGATTCGCTATATGAACTATAATGGATGTAAGAGAAAGTTTGATGT 7730403 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || ||| | || || || ||||||||||| || Sbjct 3913402 ATGCAGATTTTCGTCAAGACGCTAACGGGAAAGACAATCACCCTCGAAGTGGAACCTTCA 3913343 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| |||||||||||||| |||||||| || || ||||| Sbjct 3913342 GACACTATCGAGAATGTCAAGGCCAAAATTCAAGACAAGGAAGGCATTCCTCCGGATCAG 3913283 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||||| || || ||||||| | ||| | || || ||||| Sbjct 3913282 CAACGTCTCATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGAACCCTGTCTGACTACAAT 3913223 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||||||| | ||| | || ||||| |||| || || || Sbjct 3913222 ATCCAGAAAGAGTCGACCCTTCATCTCGTCCTGCGTCTGCGAGGAGGGAT 3913173 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || ||||| |||||| | || || | ||||||||||| || Sbjct 3913174 ATGCAAATCTTCGTCAAGACACTGACAGGCAAGACCATCACCTTGGAAGTGGAACCTTCG 3913115 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| |||||| || |||||||| || ||||| || || || || || Sbjct 3913114 GATACCATTGAGAATGTCAAAGCCAAGATTCAAGATAAGGAAGGTATCCCTCCGGACCAG 3913055 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | ||| ||||| || |||||||| | ||| | ||| || ||| Sbjct 3913054 CAACGCTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGAAGGACACTCAGCGACTATAAC 3912995 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| || |||||||| | || ||||| | || |||| ||||| Sbjct 3912994 ATTCAGAAAGAGTCGACTCTCCACTTGGTACTTCGCCTGCGTGGTGG 3912948 >seq1 Length=9333084 Score = 134 bits (148), Expect = 1e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| || || || || |||| |||||| | || ||| | || |||||| | | Sbjct 5360196 CCATGCAGATCTTCGTCAAGACGTTGACTGGCAAGACCATCACTTTGGAGGTGGAAGCCT 5360137 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||| |||| |||| ||||| || || || || || |||||||| || || || | Sbjct 5360136 CGGACACGATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCGGACC 5360077 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | |||||| | || | |||||||||||| ||||||| | |||| | || || |||| Sbjct 5360076 AGCAGCGTCTGATCTTCGCCGGCAAACAGCTGGAAGATGGCAGGACCCTATCTGACTACA 5360017 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || || ||||| ||| | || ||||| | ||| | || || ||||| Sbjct 5360016 ACATCCAGAAAGAGTCCACCCTTCACTTGGTCCTTCGTCTCCGTGGAGGCAT 5359965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434917312704000