Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1 196 1e-44 seq2 190 5e-43 >seq1 Length=9333084 Score = 196 bits (216), Expect = 1e-44 Identities = 178/222 (80%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGT 210952 ||||| | ||||||||||| || || || || || |||||||| || || | ||| ||| Sbjct 5359746 CGAAGACGGAGGACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGCTCAA-GGT 5359804 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||| |||||||||||||||||||||||||| || ||||| ||||| || |||| || Sbjct 5359805 TCGTCCGTCTTCCAGCTGCTTGCCTGCGAAGATGAGACGTTGCTGGTCCGGTGGAATCCC 5359864 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||||||||| ||| ||||| ||||| |||||||| || || ||||| Sbjct 5359865 TTCCTTGTCCTGGATCTTAGCTTTGACGTTCTCGATAGTGTCAGACGCCTCCACTTCGAG 5359924 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| ||||| ||||| || || | |||||| Sbjct 5359925 GGTGATTGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 5359966 Score = 185 bits (204), Expect = 2e-41 Identities = 176/225 (78%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | ||||| | |||||| ||||||||||| |||||||| || || | || Sbjct 5359970 TCCACGGAGACGAAGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGATAG 5360029 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 |||||| |||||||||||||| ||||| |||||||| || || || ||||| ||||||| Sbjct 5360030 GGTCCTGCCATCTTCCAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGAAT 5360089 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||||||| ||||||||||| || || || ||||| ||||| ||| ||| ||||| Sbjct 5360090 GCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATCGTGTCCGAGGCTTCCACCTC 5360149 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | |||||| ||||| || || | ||||| || || | |||||| Sbjct 5360150 CAAAGTGATGGTCTTGCCAGTCAACGTCTTGACGAAGATCTGCAT 5360194 Score = 170 bits (188), Expect = 4e-37 Identities = 171/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| | |||||||| ||||| || || ||||| || || | |||||| Sbjct 5359517 ACGAAGACGGAGGACTAAATGAAGAGTAGACTCCTTCTGTATGTTGTAGTCAGAAAGGGT 5359576 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||| |||||||| || || || ||||| || |||||||| || ||||| | || Sbjct 5359577 GCGTCCATCCTCCAGCTGTTTACCCGCAAAGATCAGACGTTGTTGATCCGGAGGGATGCC 5359636 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||| ||||| || ||||| |||||||||||||| ||| ||||| || Sbjct 5359637 TTCCTTGTCCTGAATCTTGGCCTTGACGTTCTCGATGGTGTCAGAAGCTTCGACCTCCAG 5359696 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || ||||| | ||||| || || | |||||| Sbjct 5359697 CGTGATGGTTTTGCCCGTCAAGGTCTTGACGAAGATCTGCAT 5359738 Score = 107 bits (118), Expect = 4e-18 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || |||||||| |||||||| ||||||||||| || | || ||||| |||||| Sbjct 1625427 AGGACGAGATGAAGAGTCGACTCTTTCTGGATGTTATAGTCTGACAGTGTCCTGCCATCT 1625486 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 ||||||||||| || |||||||| | || ||||| || ||||| Sbjct 1625487 TCCAGCTGCTTTCCGGCGAAGATCAAACGCTGTTGATCCGGAGG 1625530 >seq2 Length=9028361 Score = 190 bits (210), Expect = 5e-43 Identities = 177/225 (79%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | ||||| | ||| || || |||||||| |||||||| || || | || Sbjct 3913406 TCCACGGAGACGGAGGACCAAGTGTAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAG 3913465 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | |||||||||||||||||||| |||||||| || || ||||| || ||||| | Sbjct 3913466 GGTTCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCCGGAGGGAT 3913525 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||||| |||||||| ||||| || ||||| ||||| ||||||||| |||||||| Sbjct 3913526 ACCTTCTTTGTCCTGAATCTTGGCCTTGACGTTCTCGATCGTGTCAGAGGGCTCAACCTC 3913585 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| ||||| || ||||| ||||| ||||| | |||||| Sbjct 3913586 GAGCGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 3913630 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || ||||| || |||||||| ||||| || || || | ||||| | |||||| Sbjct 3913191 AGGACGAGATGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGACAGGGTTCGGCCATCT 3913250 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| || ||||| || || ||||||| ||||||||||| Sbjct 3913251 TCCAGCTGCTTTCCGGCAAAGATGAGACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCT 3913310 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || || || || ||||| ||||| || ||| || ||||| ||||| ||| Sbjct 3913311 TGAATTTTGGCCTTGACATTCTCGATAGTGTCTGAAGGTTCCACTTCGAGGGTGATTGTC 3913370 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| || ||||| || || | |||||| Sbjct 3913371 TTTCCCGTTAGCGTCTTGACGAAAATCTGCAT 3913402 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||| |||||||| || |||||||| || || |||||||| ||| Sbjct 3912963 AGTACCAAGTGGAGAGTCGACTCTTTCTGAATGTTATAGTCGCTGAGTGTCCTTCCGTCT 3913022 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| | |||||| ||||| ||||| | |||||||| || Sbjct 3913023 TCCAGCTGCTTGCCAGCGAAGATCAAGCGTTGCTGGTCCGGAGGGATACCTTCCTTATCT 3913082 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||| || || || ||||| || || ||| || || | ||||| ||| Sbjct 3913083 TGAATCTTGGCTTTGACATTCTCAATGGTATCCGAAGGTTCCACTTCCAAGGTGATGGTC 3913142 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | ||||| Sbjct 3913143 TTGCCTGTCAGTGTCTTGACGAAGATTTGCAT 3913174 Score = 107 bits (118), Expect = 4e-18 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 ||||| ||||||||||| || |||||| ||||||||||| || || ||| |||||| Sbjct 4632521 CCTTCTTTGTCCTGGATTTTGGCTTTCACATTTTCGATGGTATCCGATGGTTCGACCTCG 4632462 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| |||||||| ||||| ||||| ||||| | ||||||||| Sbjct 4632461 AGCGTGATGGTCTTTCCGGTGAGGGTCTTCACAAAGATCTGCATTTT 4632415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159149029673000