Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2 116 3e-21 seq1 102 6e-17 >seq2 Length=9028361 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || ||||| ||||| ||||| || | Sbjct 3913630 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACGCTCGAGGTTGAGCCCTCT 3913571 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || ||| |||||||||||| | || || |||||| Sbjct 3913570 GACACGATCGAGAACGTCAAGGCCAAGATTCAGGACAAAGAAGGTATCCCTCCGGATCAA 3913511 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || ||||| || |||||||| | || || | ||| |||||| Sbjct 3913510 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGAACCCTCTCCGACTACAAC 3913451 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || |||||||| || |||| || || Sbjct 3913450 ATCCAGAAAGAGTCGACCCTACACTTGGT 3913422 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || || |||||||| || ||||| |||||||| || | | Sbjct 3913402 ATGCAGATTTTCGTCAAGACGCTAACGGGAAAGACAATCACCCTCGAAGTGGAACCTTCA 3913343 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || ||| | || | |||||| ||||| ||||| | || || ||||| Sbjct 3913342 GACACTATCGAGAATGTCAAGGC-CAAAATTCAAGACAAGGAAGGCATTCCTCCGGATCA 3913284 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || |||||||| || || |||||||| | || || | || ||||| Sbjct 3913283 GCAACGTCTCATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGAACCCTGTCTGACTACAA 3913224 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || |||||||| || | ||| | || | | |||||||||| Sbjct 3913223 TATCCAGAAAGAGTCGACCCTTCATCTCGTCCTGCGTCTGCGAGGAGG 3913176 >seq1 Length=9333084 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | ||||| ||||| ||||| || || || || | | Sbjct 5359738 ATGCAGATCTTCGTCAAGACCTTGACGGGCAAAACCATCACGCTGGAGGTCGAAGCTTCT 5359679 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || ||| ||||| ||||| | || || |||||| Sbjct 5359678 GACACCATCGAGAACGTCAAGGCCAAGATTCAGGACAAGGAAGGCATCCCTCCGGATCAA 5359619 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||| || ||||| ||||| || | |||||| | || |||||| Sbjct 5359618 CAACGTCTGATCTTTGCGGGTAAACAGCTGGAGGATGGACGCACCCTTTCTGACTACAAC 5359559 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||| || ||||| || | |||||||| Sbjct 5359558 ATACAGAAGGAGTCTACTCTTCATTTAGT 5359530 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || || || || |||||| | || || || || || Sbjct 5360194 ATGCAGATCTTCGTCAAGACGTTGACTGGCAAGACCATCACTTTGGAGGTGGAAGCCTCG 5360135 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | || || ||||| | || || || || Sbjct 5360134 GACACGATCGAGAATGTCAAGGCCAAGA-TCCAGGATAAGGAAGGCATTCCTCCGGACCA 5360076 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||||||||| |||||||| | | || || || ||||| Sbjct 5360075 GCAGCGTCTGATCTTCGCCGGCAAACAGCTGGAAGATGGCAGGACCCTATCTGACTACAA 5360016 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 5360015 CATCCAGAAAGAGTCCAC 5359998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008776101600