Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2 147 5e-30 seq1 147 5e-30 seq200 105 2e-17 seq11 84.2 5e-11 >seq2 Length=9028361 Score = 147 bits (162), Expect = 5e-30 Identities = 165/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | |||||| || || || || || ||||| |||| |||||| || | || ||| Sbjct 3913182 CGCAGACGCAGGACGAGATGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGACAGGGTT 3913241 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| |||||||| || || ||||| || ||||| || || || ||||| ||| Sbjct 3913242 CGGCCATCTTCCAGCTGCTTTCCGGCAAAGATGAGACGTTGCTGATCCGGAGGAATGCCT 3913301 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||| || || ||| ||| ||||| |||||||| | |||||| || | Sbjct 3913302 TCCTTGTCTTGAATTTTGGCCTTGACATTCTCGATAGTGTCTGAAGGTTCCACTTCGAGG 3913361 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| ||||| | || || | ||| | ||||| Sbjct 3913362 GTGATTGTCTTTCCCGTTAGCGTCTTGACGAAAATCTGCAT 3913402 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||||||||| || ||||| || | || || ||| | || || || ||| Sbjct 3912963 AGTACCAAGTGGAGAGTCGACTCTTTCTGAATGTTATAGTCGCTGAGTGTCCTTCCGTCT 3913022 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| | ||||| ||||| || || ||||||||||| ||| Sbjct 3913023 TCCAGCTGCTTGCCAGCGAAGATCAAGCGTTGCTGGTCCGGAGGGATACCTTCCTTATCT 3913082 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| || ||| || ||||| || || | |||||| || || ||||| ||| Sbjct 3913083 TGAATCTTGGCTTTGACATTCTCAATGGTATCCGAAGGTTCCACTTCCAAGGTGATGGTC 3913142 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | |||||| Sbjct 3913143 TTGCCTGTCAGTGTCTTGACGAAGATTTGCAT 3913174 Score = 132 bits (146), Expect = 1e-25 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| || || || ||||| |||| ||||| |||| | |||| |||||| Sbjct 3913419 AGGACCAAGTGTAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCT 3913478 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || ||||| || || || |||||||| ||||| Sbjct 3913479 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCCGGAGGGATACCTTCTTTGTCC 3913538 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || ||||| ||||| |||| || || || | |||||| ||| Sbjct 3913539 TGAATCTTGGCCTTGACGTTCTCGATCGTGTCAGAGGGCTCAACCTCGAGCGTGATGGTC 3913598 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 3913599 TTGCCAGT 3913606 >seq1 Length=9333084 Score = 147 bits (162), Expect = 5e-30 Identities = 165/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | |||||||||||||| || ||||| || |||| ||||| ||| ||| ||| Sbjct 5359746 CGAAGACGGAGGACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGCTCAAGGTT 5359805 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || ||||| |||||||| || |||||||| || ||||| ||||| || ||||| ||| Sbjct 5359806 CGTCCGTCTTCCAGCTGCTTGCCTGCGAAGATGAGACGTTGCTGGTCCGGTGGAATCCCT 5359865 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| || || ||||| ||||| || | ||||| || | Sbjct 5359866 TCCTTGTCCTGGATCTTAGCTTTGACGTTCTCGATAGTGTCAGACGCCTCCACTTCGAGG 5359925 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || || | || || | ||| | ||||| Sbjct 5359926 GTGATTGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 5359966 Score = 122 bits (134), Expect = 2e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| | || ||||| || || || || | ||||| || | | || Sbjct 5359517 ACGAAGACGGAGGACTAAATGAAGAGTAGACTCCTTCTGTATGTTGTAGTCAGAAAGGGT 5359576 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || ||||| || || || ||||| || |||||||| || || || || || Sbjct 5359577 GCGTCCATCCTCCAGCTGTTTACCCGCAAAGATCAGACGTTGTTGATCCGGAGGGATGCC 5359636 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| || ||||| ||| || ||||||||||| || | ||| || || | Sbjct 5359637 TTCCTTGTCCTGAATCTTGGCCTTGACGTTCTCGATGGTGTCAGAAGCTTCGACCTCCAG 5359696 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| || ||||||||||| || || | ||| | ||||| Sbjct 5359697 CGTGATGGTTTTGCCCGTCAAGGTCTTGACGAAGATCTGCAT 5359738 >seq200 Length=14428 Score = 105 bits (116), Expect = 2e-17 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||||||||||| || | | || ||||||||| |||| ||||| ||||||||||| Sbjct 145 CAACTTTACAATGTCACAGTAACCAGACATGCCTTTATTATAATTTTTTTTTTTGTTATA 204 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || || |||| || || || ||||| ||||| || || | || ||||| || || ||| Sbjct 205 CCTATTCTGATCGGAGGCTTTGGAAACTGATTAGTCCCACTTATAATTGGGGCGCCGGAT 264 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTT 7724 || ||||| ||| | | || ||| |||| |||||| | || || || || || Sbjct 265 ATAGCTTTCCCACGAATAAATAATTTAAGATTTTGACTTCTGCCCCCCTCTTT 317 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| || || ||||||||||| |||| ||||| || || ||||| || ||||| |||| Sbjct 717 TTCTGGGTGGCCAAAAAATCAAAATAGGTGTTGGTATAGAATAGGGTCCCCTCCCCCTGC 658 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 |||||| ||||| |||||||||||||| ||| ||||| Sbjct 657 TGGATCGAAAAAAGAAGTATTAAAATTTCGGTCAAGTAAAA 617 >seq11 Length=1810422 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| || || ||||||||||| |||| ||||| || | ||||| || || || |||| Sbjct 1690239 TTCTGGGTGTCCAAAAAATCAAAATAGGTGTTGGTATAAAATAGGGTCTCCACCCCCTGC 1690180 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 |||||||||||| ||| |||||||||| |||| | |||| Sbjct 1690179 TGGATCAAAAAAAGAAGTGTTAAAATTTCGATCAATCAAAA 1690139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192528144138800