Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2 122 1e-22 seq18 86.0 9e-12 >seq2 Length=9028361 Score = 122 bits (134), Expect = 1e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 76843 CCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATAT 76902 ||| | |||||||||||||||||||||| ||||| || | | | | || ||||| || | Sbjct 7429917 CCAAAGTCCATCCGTAGAAATGCATGCTAGTCAGCTTCGCAAAGTTCGGTTCGGCAATGT 7429976 Query 76903 GAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAA 76962 | || |||| |||||||| || |||||| ||||| | ||| |||||||| || |||| Sbjct 7429977 GGATGTTCAAGGACTGACTCTGGCAGATGAAGGCTCCACGATCCGCCGCCATCTTGATAA 7430036 Query 76963 TGGTCTTTTGAGGAATTTCCCA 76984 || |||| || ||||||||||| Sbjct 7430037 TGCTCTTCTGCGGAATTTCCCA 7430058 Score = 84.2 bits (92), Expect = 3e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 77911 GAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTG 77970 || ||||||| || || || || |||||||| || || ||| |||| ||| | || Sbjct 7431657 GATTATATAGTTCCTCGAACTCTTCGCCCCAAACGTCCGACAGTCCGGGGCTTTCGTGTG 7431716 Query 77971 GGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCC 78030 |||||||||| ||||||| || | |||| || || ||| ||||| || || |||| Sbjct 7431717 GGCACATCAAACACCAGTCGCCGTTCTCCTGGACGCGACGCATGAAGAGGTCGGGGATCC 7431776 Query 78031 ATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGAT 78090 | | || | ||| |||||||||| || || || || || || ||||| || | Sbjct 7431777 ACAAGGCCAGAAAGAGATCTCGGGCTCGTTGCTCCTCGGACCCGGTGTTCTTCCGCAGTT 7431836 Query 78091 CGAGAAACTCCATAATATCAGAATGCCATGGTTC 78124 | ||||| || | | ||| | ||||| || || Sbjct 7431837 CCAGAAAGTCGAAGACATCGGCGTGCCACGGCTC 7431870 >seq18 Length=652692 Score = 86.0 bits (94), Expect = 9e-12 Identities = 153/221 (69%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 || || | ||| || | |||||| || |||||||| ||||||| ||| ||||| | Sbjct 263916 TCGTCGCGACTGATGAGTTCGTTGCTGAAGGTGAGACCAGGCATTATTCCTCGTTTACGG 263975 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 ||||| || || | ||||| || ||| ||||| ||||| || |||| || || ||| Sbjct 263976 AGCCAGAAGATGGAGGCGAAGGAGCCACTGAAGAAGATGCCCTCGACGGAAGCGAAGGCG 264035 Query 48285 GTAAGTCTCTCTCCGTAACTGGC-TTCGTTGTGT--ATCCACCGTTGTGCCCAATCAGCC 48341 | | || ||||| |||| || | | || ||||| | | ||||| |||||| Sbjct 264036 ACGACGCGTTCGCCGTAGGTGGCGTTGGACGAGTTGATCCAACTCAGCGCCCAGTCAGCC 264095 Query 48342 TTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 48382 |||||| ||| | ||||| || || | ||| ||||| || Sbjct 264096 TTCTTCCGCACAGACGGCATCGTCTCCACAGCGTTAAACAG 264136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694667063328000