Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2 122 1e-22 seq14 84.2 3e-11 >seq2 Length=9028361 Score = 122 bits (134), Expect = 1e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 75438 CCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATAT 75497 ||| | |||||||||||||||||||||| || || || | | | |||| ||||| || | Sbjct 7429917 CCAAAGTCCATCCGTAGAAATGCATGCTAGTCAGCTTCGCAAAGTTCGGTTCGGCAATGT 7429976 Query 75498 GAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAA 75557 | || |||| |||||||| || |||||| ||||| | ||| |||||||| || |||| Sbjct 7429977 GGATGTTCAAGGACTGACTCTGGCAGATGAAGGCTCCACGATCCGCCGCCATCTTGATAA 7430036 Query 75558 TGGTCTTTTGAGGAATTTCCCA 75579 || |||| || ||||||||||| Sbjct 7430037 TGCTCTTCTGCGGAATTTCCCA 7430058 >seq14 Length=1536585 Score = 84.2 bits (92), Expect = 3e-11 Identities = 173/255 (68%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 46918 CTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCT 46977 || |||||||| ||||| | || || || || ||||| || ||||| || | | ||| Sbjct 515854 CTGTACATTTCCGAATGGACATTCTCCATGGCGATCTGGAAGCCGTAGAATGAGCGGGCT 515913 Query 46978 TCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCA 47037 |||| ||||| || ||| | || || || | || || || || || || || || Sbjct 515914 TCAGGTATCTGGACTTCTTGCGAGAACCGCTCGGTTAAGTTTTCGTTGACGATGCCGTCG 515973 Query 47038 CTAGCAGCAAAAAATGCCAATACATGTT-TAATAAAATATTTTTCATCGGTAGTCAGTTT 47096 ||||| || || || |||| | ||| | | || | ||| ||| | |||| | Sbjct 515974 CTAGCGGCGAAGAAGGCCAGGAT-TGTACTGACGAAGAGCTGTTCTTCGTCATTCAGGCT 516032 Query 47097 ATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTC 47156 |||||||| | || ||||| | | ||||||||||| | |||||||| || ||| Sbjct 516033 GTTCCAGTCTTCCATGTCTTTGGCCAGGTCTACTTCTTCCACGGTCCAGAAGGAGGCCGT 516092 Query 47157 TGCTTTTTTATACAT 47171 |||||| || ||||| Sbjct 516093 TGCTTTCTTGTACAT 516107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712932617664000