Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2 138 3e-27 seq1 125 2e-23 >seq2 Length=9028361 Score = 138 bits (152), Expect = 3e-27 Identities = 160/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| |||||||| || |||||||| ||||| ||||| || | | |||| |||||| Sbjct 3913191 AGGACGAGATGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGACAGGGTTCGGCCATCT 3913250 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| ||||| ||||| || | ||||| |||| | || |||||||| | Sbjct 3913251 TCCAGCTGCTTT--CCGGCAAAGATGAGACGTTGCTGATCCGGAGGAATGCCTTCCTTGT 3913308 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 |||||||||| |||||| |||| | |||||||| || ||||| || || || | Sbjct 3913309 CTTGAATTTTGGCCTTGACATTCTCGATAGTGTCTGAAGGTTCCACTTCGAGGGTGATTG 3913368 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || ||||| || ||||| ||||| | |||||| Sbjct 3913369 TCTTTCCCGTTAGCGTCTTGACGAAAATCTGCAT 3913402 Score = 116 bits (128), Expect = 9e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| | || || || |||||||| ||||||||||| |||| | |||| Sbjct 3913412 GAGACGGAGGACCAAGTGTAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTTCG 3913471 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || || || |||||||| || | ||| || |||| | ||| ||||| Sbjct 3913472 GCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCCGGAGGGATACCTTC 3913531 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 || || ||||| || ||||| |||| | |||| || ||| || || || || Sbjct 3913532 TTTGTCCTGAATCTTGGCCTTGACGTTCTCGATCGTGTCAGAGGGCTCAACCTCGAGCGT 3913591 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| ||||| ||||| || |||| |||||| Sbjct 3913592 GATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 3913630 >seq1 Length=9333084 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||||| || |||||||| ||||||||||| || | || || || |||||| Sbjct 5359983 AGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGATAGGGTCCTGCCATCT 5360042 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| ||||||||||| || | ||||||||||| | || |||||||| || Sbjct 5360043 TCCAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTATCC 5360102 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || |||||| |||| | |||| || || || || | ||| || || Sbjct 5360103 TGGATCTTGGCCTTGACATTCTCGATCGTGTCCGAGGCTTCCACCTCCAAAGTGATGGTC 5360162 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | ||||| ||||||| |||||| Sbjct 5360163 TTGCCAGTCAACGTCTTGACGAAGATCTGCAT 5360194 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| | ||||||||||||||| || || |||||||| || | | || | ||||| Sbjct 5359526 GAGGACTAAATGAAGAGTAGACTCCTTCTGTATGTTGTAGTCAGAAAGGGTGCGTCCATC 5359585 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || ||| || || ||||| || | || || |||| | ||| |||||||| || Sbjct 5359586 CTCCAGCTGTTTACCCGCAAAGATCAGACGTTGTTGATCCGGAGGGATGCCTTCCTTGTC 5359645 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||| || ||||| |||| | | |||| ||| || || || || || || || Sbjct 5359646 CTGAATCTTGGCCTTGACGTTCTCGATGGTGTCAGAAGCTTCGACCTCCAGCGTGATGGT 5359705 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||||| | ||||| ||||||| |||||| Sbjct 5359706 TTTGCCCGTCAAGGTCTTGACGAAGATCTGCAT 5359738 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||||||||| || || || || || || ||||||||||| ||| || |||| || || Sbjct 5359754 GAGGACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGCTCAAGGTTCGTCCGTC 5359813 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || || || |||||||| || | |||||||||| | || |||||||| || Sbjct 5359814 TTCCAGCTGCTTGCCTGCGAAGATGAGACGTTGCTGGTCCGGTGGAATCCCTTCCTTGTC 5359873 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || |||||| |||| | |||| || ||| ||||| || || || || Sbjct 5359874 CTGGATCTTAGCTTTGACGTTCTCGATAGTGTCAGACGCCTCCACTTCGAGGGTGATTGT 5359933 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| ||||| ||||||| |||||| Sbjct 5359934 CTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 5359966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153817843334200