Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq25796 95.1 3e-14 seq16262 93.3 9e-14 seq16261 93.3 9e-14 seq7221 93.3 9e-14 seq8805 91.5 3e-13 seq130909 87.8 4e-12 seq117441 87.8 4e-12 seq165848 86.0 1e-11 seq20450 86.0 1e-11 seq6729 86.0 1e-11 >seq25796 Length=6669 Score = 95.1 bits (104), Expect = 3e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764 ||| |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||| Sbjct 3719 CGCATGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTT 3778 Query 165765 CGAGCCCCACGATGGGC 165781 ||||||||||| ||||| Sbjct 3779 CGAGCCCCACGTTGGGC 3795 >seq16262 Length=1531 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||| Sbjct 981 TTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 1040 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 1041 GCCCCACGTTGGGC 1054 >seq16261 Length=2724 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||| Sbjct 1161 TTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 1220 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 1221 GCCCCACGTTGGGC 1234 >seq7221 Length=7938 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 || |||||| ||||||||||||||||||| ||||| ||||||| |||||||||||| Sbjct 2688 GCATGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTC 2747 Query 165766 GAGCCCCACGATGGGC 165781 |||||||||| ||||| Sbjct 2748 GAGCCCCACGTTGGGC 2763 >seq8805 Length=220 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 192 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 133 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 132 CCCCACGTTGGGC 120 >seq130909 Length=586 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 500 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 441 Query 165769 CCCCACGATGGGC 165781 |||||| ||||| Sbjct 440 CCCCACCTTGGGC 428 >seq117441 Length=126 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||| | Sbjct 119 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGGG 60 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 59 CCCCACGTTGGGC 47 >seq165848 Length=481 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||| ||||||||||||||| | ||||| ||||||| ||||||| ||||||| Sbjct 236 TGCCCGGCTATCTCAGTCGGTAGAGCACGAGACTCTTAATCTCAGGGTCGTGTGTTCGAG 177 Query 165769 CCCCACGATGGGCAT 165783 |||| || ||||||| Sbjct 176 CCCCCCGTTGGGCAT 162 >seq20450 Length=450 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||| ||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 242 TGCCCGGCTATCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 183 Query 165769 CCCCACGATGGGCAT 165783 |||| || ||||||| Sbjct 182 CCCCCCGTTGGGCAT 168 >seq6729 Length=690 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||| ||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 207 TGCCCGGCTATCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 148 Query 165769 CCCCACGATGGGCAT 165783 |||| || ||||||| Sbjct 147 CCCCCCGTTGGGCAT 133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1055505655401390