Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq157723 120 4e-22 seq63152 114 2e-20 >seq157723 Length=4480 Score = 120 bits (132), Expect = 4e-22 Identities = 198/284 (70%), Gaps = 4/284 (1%) Strand=Plus/Plus Query 24308 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367 || |||||| | | ||||||||| || ||||| | |||||||| | ||| || || Sbjct 3007 ATTTATCCAATCTAAAGCCCAATCTGCTTTCTTCCTAACACAAGGGAGATGCTCAATGGC 3066 Query 24368 ATTAAAGAGATAGtttttttCATTACTATCT--TTAACATATGTATCAATCAAAAGACTA 24425 ||| |||||| | | ||| ||| || || | |||||||| || | |||||| Sbjct 3067 ATTGAAGAGACGTTCTCGTTCC--ACTGGCTCCTTGATGTATGTATCTATGAGTAGACTA 3124 Query 24426 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 24485 ||||| || ||||| |||||||| || || ||||| || || || || || | ||| || Sbjct 3125 TACATCTCTGAATGGATGTTTTCCATTGCTATTTGGAAACCATAAAAGCAACGAGCTTCT 3184 Query 24486 GTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 24545 | | ||||||||| | || | || | || ||||||||||| || || |||||| Sbjct 3185 GGCACTTGTACTTCTTGTGAGAAACACTCAACCAAGTTTTCATTCACAATACCATCACTG 3244 Query 24546 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC 24589 || ||||| || || || | ||| || |||| | |||| || Sbjct 3245 GCAGCAAAGAAGGCTAAGATATGAGAGATGAAATGTCTTTCATC 3288 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| || || | || ||||| || || | || ||||| |||||||| || || Sbjct 2782 TCATCTCTGCTTATGAGCTCATTGGAGAAAGTTAAACCAGGCATAAGGCCACGTTTCTTC 2841 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 |||||||| || || ||||||||||| || ||||| || ||||| || || ||||| || Sbjct 2842 AGCCAAAAGATAGATGCAAATGATCCTGAGAAGAAGATGCCTTCAACAGCAGCAAAAGCT 2901 Query 24279 ATAAGTCTTTCTCCA 24293 | || ||| || ||| Sbjct 2902 ACAATTCTCTCACCA 2916 Score = 89.7 bits (98), Expect = 6e-13 Identities = 140/200 (70%), Gaps = 8/200 (4%) Strand=Plus/Plus Query 23964 AATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 24023 |||||||| || ||||| || || || | |||||| ||||| ||||| || || || Sbjct 2499 AATCTATCAGCAACAAATTCAATGTAAACTCTCATCAAATCACAGTTCATGCCAATGAGC 2558 Query 24024 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 24083 ||||||||||| | || | |||||||||||||| || || || || | Sbjct 2559 CGCACTGGAAGAGCGTCTGTTAAGAATTCTTGTTCAATCTTCACAGCATC----ATCAAT 2614 Query 24084 GATC----TTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGC 24139 |||| ||||| | |||||| ||| || | |||||||| ||||||| || || Sbjct 2615 GATCTTCTTTACTTTCTCTTCAGATGGTTTATTCTTCAAATGTTTGTACATCAAGCAAGC 2674 Query 24140 GAAATCGCAGTGTAGACCCT 24159 ||||| ||||| ||||||| Sbjct 2675 AAAATCACAGTGGAGACCCT 2694 >seq63152 Length=2952 Score = 114 bits (126), Expect = 2e-20 Identities = 207/303 (68%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 ||| ||||| || || || |||| ||||||| || |||| | ||| || ||| | || Sbjct 585 TAGCCCTATACCACCAGCACTTTTTGAGATTAGAGCACATCTTGTTAGAGTCTCAAATAT 526 Query 54364 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 54423 | || || ||||| | ||||| | ||||||||||| || | ||| | | Sbjct 525 ATCATCAATGCTATCTCCTGTCATGGCCAAAAGAAAACAGCTTGATAGTTGAGCTCTGTT 466 Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 || || |||||||| | || || || || || ||||||||| ||||||| | | ||| Sbjct 465 GGTACCAGCATTAAACAGTGTCGGTGATGCATGTGTAAACCATCTTTCAGACATCAAATT 406 Query 54484 GTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 54543 || || | ||||| ||||| ||||| ||| || || | || |||||||| || Sbjct 405 ATAAGTACCAATAGCGGAGTCAATATCTTCACCATGTATACCAATTGATACACGCATCAA 346 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 ||| || |||||||||||| | || || || | ||| | | ||| ||| | ||||| Sbjct 345 CATATGTTGAGGTCTTTCAGCAATTTTTCCATTGAGTTTTAAAAGGTAAGATCTCTCCAA 286 Query 54604 AGT 54606 || Sbjct 285 TGT 283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592452126739440