Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq109567 102 7e-17 >seq109567 Length=8344 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | ||||| |||| |||||||| || ||| ||| |||| | Sbjct 5564 ATGCAGATTTTTGTGAAAACCCTGACTGGCAAAACAATAACCCTAGAAGTGGAAGCAAGC 5623 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || |||||| || |||||||| | || ||| ||| Sbjct 5624 GACACCATTGAGAATGTGAAAACCAAAATTCAAGACAAAGAAGGGATCCCACCAGACCAA 5683 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | || |||||||| ||||| |||||||||||| | ||| || | |||||||| Sbjct 5684 CAACGTCTCATCTTTGCAGGCAAGCAACTGGAAGATGGCCGAACCCTGTCTGATTACAAC 5743 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 |||||||| ||||| ||||||||| |||| Sbjct 5744 ATTCAGAAAGAATCCACTCTTCACTTGGT 5772 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | ||||| ||||| ||||| || || || ||| || || Sbjct 4880 ATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACGATCACTCTAGAAGTTGAGCCAAGC 4939 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | || | ||| |||||| || |||||||| | || ||||||| Sbjct 4940 GACACGATTGAAAATGTAAAGACGAAAATTCAAGACAAAGAAGGCATCCCGCCAGATCAA 4999 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | || || || || |||||||||||||||||| | ||| || | || |||||| Sbjct 5000 CAACGTCTCATTTTCGCTGGCAAACAACTGGAAGATGGCCGAACCTTGTCTGACTACAAT 5059 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||| ||||| || ||||| |||| |||| |||| || || Sbjct 5060 ATCCAGAAAGAATCAACCCTTCATTTGGTTCTACGTCTACGTGGTGG 5106 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | ||||| ||||| || ||||| |||||| || || | Sbjct 5336 ATGCAGATTTTTGTGAAAACCTTGACTGGTAAAACTATTACCCTTGAGGTTGAGGCAAGC 5395 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| ||| ||| || |||||||| | || ||||||| Sbjct 5396 GACACAATTGAGAATGTGAAGACAAAGATTCAAGACAAAGAAGGAATCCCACCAGATCAA 5455 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | || |||||||| ||||| |||||||||||| ||| || | || |||||| Sbjct 5456 CAACGTCTCATCTTTGCAGGCAAGCAACTGGAAGATGGTCGAACCTTGTCTGACTACAAT 5515 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||||||||| || ||||| |||| |||| |||| || || Sbjct 5516 ATCCAGAAGGAATCAACCCTTCATTTGGTTCTACGTCTACGTGGTGG 5562 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | ||||| ||||| ||||| || || || ||| || || Sbjct 5108 ATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACGATCACTCTAGAAGTTGAGCCAAGC 5167 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | | ||| |||||| ||||||||||| | || ||| ||| Sbjct 5168 GACACGATTGAAAACGTGAAGACGAAAATTCAAGATAAAGAAGGCATCCCGCCAGACCAA 5227 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | || || || || |||||||||||||||||| ||| || | || |||||| Sbjct 5228 CAGCGTCTCATTTTCGCTGGCAAACAACTGGAAGATGGTCGAACCTTGTCTGACTACAAT 5287 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||| ||||| || ||||| |||| |||| |||| || || Sbjct 5288 ATCCAGAAAGAATCGACCCTTCATTTGGTTCTACGTCTACGTGGTGG 5334 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | ||||| || || ||||| || || ||| || |||||| Sbjct 4652 ATGCAAATCTTTGTGAAAACCTTAACTGGCAAGACTATCACCCTTGAGGTTGAACCCAGT 4711 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| || ||| || |||||||| | || ||| ||| Sbjct 4712 GATACTATCGAGAATGTAAAGACGAAGATTCAAGACAAAGAAGGCATCCCGCCAGACCAA 4771 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | || ||||| || ||||||||||| |||||| | |||| || || ||||| Sbjct 4772 CAACGTCTCATCTTCGCTGGCAAACAACTCGAAGATGGCCGAACTTTGAGTGACTACAAC 4831 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || ||||| ||||| || |||||| |||| Sbjct 4832 ATACAGAAAGAATCAACCCTTCACTTGGT 4860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427443044326715