Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq109567 118 9e-22 >seq109567 Length=8344 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24830 TCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGA 24889 ||||||| || ||||| ||||||||||| ||||| || || ||| | || || ||| | | Sbjct 4650 TCATGCAAATCTTTGTGAAAACCTTAACTGGCAAGACTATCACCCTTGAGGTTGAACCCA 4709 Query 24890 GCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACC 24949 | || | | | || | ||| ||| || ||| | ||||||||| | ||| |||| Sbjct 4710 GTGATACTATCGAGAATGTAAAGACGAAGATTCAAGACAAAGAAGGCATCCCGCCAGACC 4769 Query 24950 AGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACA 25009 | |||||| | || | || ||||||||||| |||||| | ||| ||| || |||| Sbjct 4770 AACAACGTCTCATCTTCGCTGGCAAACAACTCGAAGATGGCCGAACTTTGAGTGACTACA 4829 Query 25010 GCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 |||||||||||| | || ||||| || || | || | ||||| ||| Sbjct 4830 ACATACAGAAAGAATCAACCCTTCACTTGGTTCTTCGTCTTCGCGGTGGT 4879 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| ||||| |||||| | || |||||||| |||||| | || || ||| | ||| Sbjct 5564 ATGCAGATTTTTGTGAAAACCCTGACTGGCAAAACAATAACCCTAGAAGTGGAAGCAAGC 5623 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | || | ||| || |||||| | |||||||| | || ||||| Sbjct 5624 GACACCATTGAGAATGTGAAAACCAAAATTCAAGACAAAGAAGGGATCCCACCAGACCAA 5683 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||| | || | ||| ||||| |||||||||||| | || || ||||||| | Sbjct 5684 CAACGTCTCATCTTTGCAGGCAAGCAACTGGAAGATGGCCGAACCCTGTCTGATTACAAC 5743 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGT 25040 || |||||||| |||| ||||| || || Sbjct 5744 ATTCAGAAAGAATCCACTCTTCACTTGGT 5772 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || || |||||||| || ||||| ||||| || | || || || | ||| Sbjct 4880 ATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACGATCACTCTAGAAGTTGAGCCAAGC 4939 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | |||| ||| ||| |||||| | ||||||||| | ||| || || Sbjct 4940 GACACGATTGAAAATGTAAAGACGAAAATTCAAGACAAAGAAGGCATCCCGCCAGATCAA 4999 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||| | || | || |||||||||||||||||| | || || || |||| Sbjct 5000 CAACGTCTCATTTTCGCTGGCAAACAACTGGAAGATGGCCGAACCTTGTCTGACTACAAT 5059 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || |||||||| | || |||||||| || |||| | || || ||| Sbjct 5060 ATCCAGAAAGAATCAACCCTTCATTTGGTTCTACGTCTACGTGGTGGT 5107 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || || |||||||| || ||||| ||||| || | || || || | ||| Sbjct 5108 ATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACGATCACTCTAGAAGTTGAGCCAAGC 5167 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | |||| || ||| |||||| | ||||||||| | ||| ||||| Sbjct 5168 GACACGATTGAAAACGTGAAGACGAAAATTCAAGATAAAGAAGGCATCCCGCCAGACCAA 5227 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGAT--TCCATGACTATGAACGATTACA 25009 || ||| | || | || |||||||||||||||||| || | || || || |||| Sbjct 5228 CAGCGTCTCATTTTCGCTGGCAAACAACTGGAAGATGGTCGA--ACCTTGTCTGACTACA 5285 Query 25010 GCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || |||||||| | || |||||||| || |||| | || || ||| Sbjct 5286 ATATCCAGAAAGAATCGACCCTTCATTTGGTTCTACGTCTACGTGGTGGT 5335 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| ||||| |||||||| || || ||||| || ||| | || || || | ||| Sbjct 5336 ATGCAGATTTTTGTGAAAACCTTGACTGGTAAAACTATTACCCTTGAGGTTGAGGCAAGC 5395 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | || | ||| ||| ||| ||| | |||||||| | || || || Sbjct 5396 GACACAATTGAGAATGTGAAGACAAAGATTCAAGACAAAGAAGGAATCCCACCAGATCAA 5455 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGAT--TCCATGACTATGAACGATTACA 25009 |||||| | || | ||| ||||| |||||||||||| || | || || || |||| Sbjct 5456 CAACGTCTCATCTTTGCAGGCAAGCAACTGGAAGATGGTCGA--ACCTTGTCTGACTACA 5513 Query 25010 GCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || ||||| || | || |||||||| || |||| | || || ||| Sbjct 5514 ATATCCAGAAGGAATCAACCCTTCATTTGGTTCTACGTCTACGTGGTGGT 5563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417431958121760