Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq109567 116 3e-21 seq157723 114 1e-20 seq164270 89.7 5e-13 >seq109567 Length=8344 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| || || |||| ||||| |||||||| | || ||||| || | Sbjct 5108 ATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACGATCACTCTAGAAGTTGAGCCAAGC 5167 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || || || ||| || || |||||| | ||||| ||||| Sbjct 5168 GACACGATTGAAAACGTGAAGACGAAAATTCAAGATAAAGAAGGCATCCCGCCAGACCAA 5227 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||||||||| ||||||| | || || || || || Sbjct 5228 CAGCGTCTCATTTTCGCTGGCAAACAACTGGAAGATGGTCGAACCTTGTCTGACTACAAT 5287 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || ||||||||||| |||||| |||| || Sbjct 5288 ATCCAGAAAGAATCGACCCTTCATTTGGTTCT 5319 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || || || | || ||||| || |||||| | || |||||||| Sbjct 4651 CATGCAAATCTTTGTGAAAACCTTAACTGGCAAGACTATCACCCTTGAGGTTGAACCCAG 4710 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | |||| | || || || || ||||| |||||| | ||||| ||||| Sbjct 4711 TGATACTATCGAGAATGTAAAGACGAAGATTCAAGACAAAGAAGGCATCCCGCCAGACCA 4770 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || ||||| || |||||||||||||| | ||||| ||| |||| || || || Sbjct 4771 ACAACGTCTCATCTTCGCTGGCAAACAACTCGAAGATGGCCGAACTTTGAGTGACTACAA 4830 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || |||||||| || ||||| |||| ||| | || | || |||| Sbjct 4831 CATACAGAAAGAATCAACCCTTCACTTGGTTCTTCGTCTTCGCGGTGGTA 4880 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| || || |||| ||||| |||||||| | || ||||| || | Sbjct 4880 ATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACGATCACTCTAGAAGTTGAGCCAAGC 4939 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || || || ||| ||||| |||||| | ||||| || || Sbjct 4940 GACACGATTGAAAATGTAAAGACGAAAATTCAAGACAAAGAAGGCATCCCGCCAGATCAA 4999 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || |||||||||||||| ||||||| || || || || || Sbjct 5000 CAACGTCTCATTTTCGCTGGCAAACAACTGGAAGATGGCCGAACCTTGTCTGACTACAAT 5059 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || |||||||| || |||||| |||| || Sbjct 5060 ATCCAGAAAGAATCAACCCTTCATTTGGTTCT 5091 >seq157723 Length=4480 Score = 114 bits (126), Expect = 1e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 57714 GATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAG 57773 ||||||||||| || || || ||||| || | || ||||||||||| |||||| | || Sbjct 3240 GATGGTATTGTGAATGAAAACTTGGTTGAGTGTTTCTCACAAGAAGTACAAGTGCCAGAA 3181 Query 57774 GCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCG 57833 || | |||||||| || || ||| | || || |||||| | |||||||| |||||| Sbjct 3180 GCTCGTTGCTTTTATGGTTTCCAAATAGCAATGGAAAACATCCATTCAGAGATGTATAGT 3121 Query 57834 CTACTCATCGATACGTACGTGAAGGA 57859 |||||||| ||||| ||| | ||||| Sbjct 3120 CTACTCATAGATACATACATCAAGGA 3095 >seq164270 Length=4554 Score = 89.7 bits (98), Expect = 5e-13 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 22181 TTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCG-GCAAGTCCATGTACAC 22239 ||||| | |||||||| || |||||| ||||||||| || | || |||||| || Sbjct 632 TTCCAACCATAAAAATGCATACTCGTCAACTTTCCATAATTCACGTCAG-CCATGTGAAC 574 Query 22240 ATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATCAATGT 22299 |||||| ||||||||||| || ||| | ||||||| || || ||||| | |||||| | Sbjct 573 ATTGAATGACTGACTCTGGTCAATATAGGCTCCTCTGTCAGCTGCCATGTCAATCAATCT 514 Query 22300 ACGCATCGACATTTCCCATACGGTCTTGTACAG 22332 | || ||||||||||| || || || || Sbjct 513 TTTCTGAGATATTTCCCATACAGTTTTATAAAG 481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444813278999760