Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq157723 111 1e-19 seq18521 98.7 9e-16 >seq157723 Length=4480 Score = 111 bits (122), Expect = 1e-19 Identities = 125/165 (76%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959 ||||||||||| | || ||||||||| |||||||| || |||||||| |||||||| || Sbjct 3104 TATGTATCTATGAGTAGACTATACATCTCTGAATGGATGTTTTCCATTGCTATTTGGAAA 3163 Query 11960 CCATAGAAACATCGTGCCTCTGAACAC-TGTACATCCACATAAAATCTTTCCGCTAAATT 12018 ||||| || || || || |||| ||| ||||| || | || | || | || || Sbjct 3164 CCATAAAAGCAACGAGCTTCTG-GCACTTGTACTTCTTGTGAGAAACACTCAACCAAGTT 3222 Query 12019 CTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATG 12063 ||||| |||||||||||||| | ||||| || |||| ||||| Sbjct 3223 TTCATTCACAATACCATCACTGGCAGCAAAGAAGGCTAAGATATG 3267 >seq18521 Length=2728 Score = 98.7 bits (108), Expect = 9e-16 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 ||||| || || || ||||| || | ||| ||||| ||||||||||| |||||||||| Sbjct 149 ACCTGGAACTCCCCTGATAACACACGTCTGGTATAAATATTGCTAGTGTATGGTTCAAAA 208 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 || || || || | |||||| |||| || || || |||||||| || || | ||||| Sbjct 209 GATTCGTTGTTTCCTAATATCTGAGCCGTTGACGCGGTAGGCATGGGCGCCAGGAGAAGA 268 Query 37258 CTATTTC 37264 ||||||| Sbjct 269 CTATTTC 275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467523017842320