Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq63152 127 3e-24 seq157723 118 1e-21 >seq63152 Length=2952 Score = 127 bits (140), Expect = 3e-24 Identities = 231/338 (68%), Gaps = 0/338 (0%) Strand=Plus/Minus Query 66300 ATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTA 66359 || ||||| ||| ||| || ||| | ||| ||| ||||| || || || |||| Sbjct 620 ATGTAGCTCCCAAATGCTCGTATACAATGAATGCTTAGCCCTATACCACCAGCACTTTTT 561 Query 66360 GAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATG 66419 ||||||| || |||| | ||| || ||| | || | || || ||||| | ||||| Sbjct 560 GAGATTAGAGCACATCTTGTTAGAGTCTCAAATATATCATCAATGCTATCTCCTGTCATG 501 Query 66420 TTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGA 66479 | ||||||||||| || | ||| | | || || |||||||| | || || Sbjct 500 GCCAAAAGAAAACAGCTTGATAGTTGAGCTCTGTTGGTACCAGCATTAAACAGTGTCGGT 441 Query 66480 GAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATA 66539 || || || ||||||||| ||||||| | | ||| || || ||||||| ||||| ||| Sbjct 440 GATGCATGTGTAAACCATCTTTCAGACATCAAATTATAAGTACCAATAGCGGAGTCAATA 381 Query 66540 TCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATC 66599 || ||| || || | || |||||||| ||||| || |||||||||||| | || Sbjct 380 TCTTCACCATGTATACCAATTGATACACGCATCAACATATGTTGAGGTCTTTCAGCAATT 321 Query 66600 TTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 66637 || || | ||| || | ||| ||| | ||||| || Sbjct 320 TTTCCATTGAGTTTTAAAAGGTAAGATCTCTCCAATGT 283 >seq157723 Length=4480 Score = 118 bits (130), Expect = 1e-21 Identities = 196/281 (70%), Gaps = 4/281 (1%) Strand=Plus/Plus Query 36331 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 36390 || |||||| | | ||||||||| || ||||| | |||||||| | ||| || || Sbjct 3007 ATTTATCCAATCTAAAGCCCAATCTGCTTTCTTCCTAACACAAGGGAGATGCTCAATGGC 3066 Query 36391 ATTAAAGAGATAGtttttttCATTACTATCT--TTAACATATGTATCAATCAAAAGACTA 36448 ||| |||||| | | ||| ||| || || | |||||||| || | |||||| Sbjct 3067 ATTGAAGAGACGTTCTCGTTCC--ACTGGCTCCTTGATGTATGTATCTATGAGTAGACTA 3124 Query 36449 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 36508 ||||| || ||||| |||||||| || || ||||| || || || || || | ||| || Sbjct 3125 TACATCTCTGAATGGATGTTTTCCATTGCTATTTGGAAACCATAAAAGCAACGAGCTTCT 3184 Query 36509 GTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 36568 | | ||||||||| | || | || | || ||||||||||| || || |||||| Sbjct 3185 GGCACTTGTACTTCTTGTGAGAAACACTCAACCAAGTTTTCATTCACAATACCATCACTG 3244 Query 36569 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTC 36609 || ||||| || || || | ||| || |||| | |||| Sbjct 3245 GCAGCAAAGAAGGCTAAGATATGAGAGATGAAATGTCTTTC 3285 Score = 100 bits (110), Expect = 4e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| || || | || ||||| || || | || ||||| |||||||| || || Sbjct 2782 TCATCTCTGCTTATGAGCTCATTGGAGAAAGTTAAACCAGGCATAAGGCCACGTTTCTTC 2841 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 36301 |||||||| || || ||||||||||| || ||||| || ||||| || || ||||| || Sbjct 2842 AGCCAAAAGATAGATGCAAATGATCCTGAGAAGAAGATGCCTTCAACAGCAGCAAAAGCT 2901 Query 36302 ATAAGTCTCTCTCCA 36316 | || |||||| ||| Sbjct 2902 ACAATTCTCTCACCA 2916 Score = 93.3 bits (102), Expect = 6e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 35987 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 36046 |||||||| || |||||||| || || | |||||| ||||| ||||| || || || Sbjct 2499 AATCTATCAGCAACAAATTCAATGTAAACTCTCATCAAATCACAGTTCATGCCAATGAGC 2558 Query 36047 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 36106 ||||||||||| | || | |||||||||||||| || || || || || Sbjct 2559 CGCACTGGAAGAGCGTCTGTTAAGAATTCTTGTTCAATCTTCACAGCATCATCAATGATC 2618 Query 36107 GATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 36166 ||||| | |||||| ||| || | |||||||| ||||||| || || ||| Sbjct 2619 TTCTTTACTTTCTCTTCAGATGGTTTATTCTTCAAATGTTTGTACATCAAGCAAGCAAAA 2678 Query 36167 TCGCAGTGTAGACCCT 36182 || ||||| ||||||| Sbjct 2679 TCACAGTGGAGACCCT 2694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656765519600520