Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq63152 132 7e-26 seq157723 114 2e-20 >seq63152 Length=2952 Score = 132 bits (146), Expect = 7e-26 Identities = 211/303 (70%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 ||| ||||| || || || |||| ||||||| || |||| | ||| || ||| | || Sbjct 585 TAGCCCTATACCACCAGCACTTTTTGAGATTAGAGCACATCTTGTTAGAGTCTCAAATAT 526 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 80333 | || |||||||| | ||||| | ||||||||||| || | ||| | | Sbjct 525 ATCATCAATGCTATCTCCTGTCATGGCCAAAAGAAAACAGCTTGATAGTTGAGCTCTGTT 466 Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 || || |||||||| | || || || || || ||||||||| ||||||||| | ||| Sbjct 465 GGTACCAGCATTAAACAGTGTCGGTGATGCATGTGTAAACCATCTTTCAGACATCAAATT 406 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 || || ||||||| || || ||||| ||| || || | | |||||||| || Sbjct 405 ATAAGTACCAATAGCGGAGTCAATATCTTCACCATGTATACCAATTGATACACGCATCAA 346 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 ||| || |||||||||||| | || || ||| | ||| || | ||||||| | ||||| Sbjct 345 CATATGTTGAGGTCTTTCAGCAATTTTTCCATTGAGTTTTAAAAGGTAAGATCTCTCCAA 286 Query 80514 AGT 80516 || Sbjct 285 TGT 283 >seq157723 Length=4480 Score = 114 bits (126), Expect = 2e-20 Identities = 195/281 (69%), Gaps = 4/281 (1%) Strand=Plus/Plus Query 50133 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 || |||||| | | ||||||||| || ||||| | |||||||| | || ||||| Sbjct 3007 ATTTATCCAATCTAAAGCCCAATCTGCTTTCTTCCTAACACAAGGGAGATGCTCAATGGC 3066 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCT--TTAACATAAGTATCGATCAAAAGACTA 50250 ||| |||||| | | ||| ||| || || | || ||||| || | |||||| Sbjct 3067 ATTGAAGAGACGTTCTCGTTCC--ACTGGCTCCTTGATGTATGTATCTATGAGTAGACTA 3124 Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 ||||| || ||||| |||||||| || || || || || || || || || | ||| || Sbjct 3125 TACATCTCTGAATGGATGTTTTCCATTGCTATTTGGAAACCATAAAAGCAACGAGCTTCT 3184 Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTG 50370 | | || |||||| | || | ||| | || ||||||||||| || || |||||| Sbjct 3185 GGCACTTGTACTTCTTGTGAGAAACACTCAACCAAGTTTTCATTCACAATACCATCACTG 3244 Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTC 50411 || ||||| || || || | ||| || |||||| |||| Sbjct 3245 GCAGCAAAGAAGGCTAAGATATGAGAGATGAAATGTCTTTC 3285 Score = 89.7 bits (98), Expect = 7e-13 Identities = 140/200 (70%), Gaps = 8/200 (4%) Strand=Plus/Plus Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848 |||||||| || |||||||| || || | |||||| ||||| ||||| || || || Sbjct 2499 AATCTATCAGCAACAAATTCAATGTAAACTCTCATCAAATCACAGTTCATGCCAATGAGC 2558 Query 49849 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 49908 ||||||||||| | || | |||||||||||||| || ||||| || | Sbjct 2559 CGCACTGGAAGAGCGTCTGTTAAGAATTCTTGTTCAATCTTCACAGCATC----ATCAAT 2614 Query 49909 GATC----TAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGC 49964 |||| | || | |||||| ||| || | |||||||| ||||||| || || Sbjct 2615 GATCTTCTTTACTTTCTCTTCAGATGGTTTATTCTTCAAATGTTTGTACATCAAGCAAGC 2674 Query 49965 GAAATCGCAGTGCAGACCCT 49984 ||||| ||||| ||||||| Sbjct 2675 AAAATCACAGTGGAGACCCT 2694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716733024586920