Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq109567 141 9e-29 >seq109567 Length=8344 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| ||| | ||| ||||||| || |||||||| || || ||||| || | Sbjct 5106 CCACCACGTAGACGTAGAACCAAATGAAGGGTTGATTCTTTCTGGATATTGTAGTCAGAC 5047 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| |||||||| ||||| | || |||||||| ||||| || || Sbjct 5046 AAGGTTCGGCCATCTTCCAGTTGTTTGCCAGCGAAAATGAGACGTTGTTGATCTGGCGGG 4987 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| |||||| |||| | ||| | |||||| | || || ||| Sbjct 4986 ATGCCTTCTTTGTCTTGAATTTTCGTCTTTACATTTTCAATCGTGTCGCTTGGCTCAACT 4927 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||||||||| ||||| ||||| ||||| || |||||| Sbjct 4926 TCTAGAGTGATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCATA 4879 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| || |||| || |||||||| ||||||||||| || ||| Sbjct 4878 CCACCGCGAAGACGAAGAACCAAGTGAAGGGTTGATTCTTTCTGTATGTTGTAGTCACTC 4819 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | |||||||||||||| ||||| |||| |||||||| || || || || Sbjct 4818 AAAGTTCGGCCATCTTCGAGTTGTTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGCGGG 4759 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| ||| || |||| | || | || || ||||||| || Sbjct 4758 ATGCCTTCTTTGTCTTGAATCTTCGTCTTTACATTCTCGATAGTATCACTGGGTTCAACC 4699 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | |||||||| || || ||||| || || |||||||| Sbjct 4698 TCAAGGGTGATAGTCTTGCCAGTTAAGGTTTTCACAAAGATTTGCAT 4652 Score = 125 bits (138), Expect = 7e-24 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| ||| | ||| ||||||| || |||||||| || || ||||| || | Sbjct 5334 CCACCACGTAGACGTAGAACCAAATGAAGGGTCGATTCTTTCTGGATATTGTAGTCAGAC 5275 Query 143018 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | || |||| ||||| |||||||| ||||| | || ||||| || || || || | Sbjct 5274 AAGGT--TCGACCATCTTCCAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGGTCTGGCG 5217 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | ||||||||||| || |||||| || | | ||| | |||||| | || || | Sbjct 5216 GGATGCCTTCTTTATCTTGAATTTTCGTCTTCACGTTTTCAATCGTGTCGCTTGGCTCAA 5157 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| | ||| | ||||||||| ||||| ||||| ||||| || |||||| Sbjct 5156 CTTCTAGAGTGATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCATA 5107 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| || |||| || |||||||| || ||||||||||| | Sbjct 5790 CCACCACGAAGACGGAGAACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAATCAGAC 5731 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| ||||| || || ||| |||| |||||||| || || || || Sbjct 5730 AGGGTTCGGCCATCTTCCAGTTGCTTGCCTGCAAAGATGAGACGTTGTTGGTCTGGTGGG 5671 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| |||||| ||| | | || | ||||| | | ||| ||| Sbjct 5670 ATCCCTTCTTTGTCTTGAATTTTGGTTTTCACATTCTCAATGGTGTCGCTTGCTTCCACT 5611 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | || ||||| |||| ||||| || || || |||||| Sbjct 5610 TCTAGGGTTATTGTTTTGCCAGTCAGGGTTTTCACAAAAATCTGCATA 5563 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| ||| | ||| ||||||| || ||||| || || || ||||| || | Sbjct 5562 CCACCACGTAGACGTAGAACCAAATGAAGGGTTGATTCCTTCTGGATATTGTAGTCAGAC 5503 Query 143018 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | || |||| ||||| ||||| || || ||| |||| |||||||| ||||| || | Sbjct 5502 AAGGT--TCGACCATCTTCCAGTTGCTTGCCTGCAAAGATGAGACGTTGTTGATCTGGTG 5445 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || ||||||||||| ||| ||| || | | || | ||||| | | || | Sbjct 5444 GGATTCCTTCTTTGTCTTGAATCTTTGTCTTCACATTCTCAATTGTGTCGCTTGCCTCAA 5385 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 | |||| || | || || || ||||| ||||| || || || |||||| Sbjct 5384 CCTCAAGGGTAATAGTTTTACCAGTCAAGGTTTTCACAAAAATCTGCATA 5335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505930320822960