Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq109567 141 7e-29 >seq109567 Length=8344 Score = 141 bits (156), Expect = 7e-29 Identities = 158/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || ||||| ||||| ||||| || ||||||||||| || ||| | ||||| Sbjct 5773 AACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAATCAGACAGGGTTCGGCCATCTTC 5714 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| ||||| || | || | |||||||||||| ||| || ||||||||||| Sbjct 5713 CAGTTGCTTGCCTGCAAAGATGAGACGTTGTTGGTCTGGTGGGATCCCTTCTTTGTCTTG 5654 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||||| | || ||| | || ||||| ||||| ||| || |||| ||| || ||||| Sbjct 5653 AATTTTGGTTTTCACATTCTCAATGGTGTCGCTTGCTTCCACTTCTAGGGTTATTGTTTT 5594 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| ||||| |||||||| |||||| Sbjct 5593 GCCAGTCAGGGTTTTCACAAAAATCTGCATA 5563 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || |||||||| || ||||| ||||||||||| || || | | ||| | ||||| Sbjct 4861 AACCAAGTGAAGGGTTGATTCTTTCTGTATGTTGTAGTCACTCAAAGTTCGGCCATCTTC 4802 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||||||||||||| | || | |||||||||||| || || ||||||||||| Sbjct 4801 GAGTTGTTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGCGGGATGCCTTCTTTGTCTTG 4742 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| || |||||||| | || || ||||| || ||| || || | ||| || || || Sbjct 4741 AATCTTCGTCTTTACATTCTCGATAGTATCACTGGGTTCAACCTCAAGGGTGATAGTCTT 4682 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || | ||||| ||||| |||||||| Sbjct 4681 GCCAGTTAAGGTTTTCACAAAGATTTGCAT 4652 Score = 120 bits (132), Expect = 2e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 || ||| ||||||||||| || ||||| || || ||||| || | ||| | || Sbjct 5092 TAGAACCAAATGAAGGGTTGATTCTTTCTGGATATTGTAGTCAGACAAGGTTCGGCCATC 5033 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||| | ||||||||||||| | || | ||||||||| || || || ||||||||||| Sbjct 5032 TTCCAGTTGTTTGCCAGCGAAAATGAGACGTTGTTGATCTGGCGGGATGCCTTCTTTGTC 4973 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 |||||| |||||||| |||| || || ||||| || || |||| || || || Sbjct 4972 TTGAATTTTCGTCTTTACATTTTCAATCGTGTCGCTTGGCTCAACTTCTAGAGTGATCGT 4913 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| ||||| || ||||| |||||| Sbjct 4912 CTTGCCAGTCAAGGTTTTCACGAAAATCTGCATA 4879 Score = 116 bits (128), Expect = 3e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 || ||| ||||||||||| || || || || || ||||| || | ||| | || Sbjct 5548 TAGAACCAAATGAAGGGTTGATTCCTTCTGGATATTGTAGTCAGACAAGGTTCGACCATC 5489 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||| | ||| ||||| || | || | ||||||||| || ||| |||||||||||||| Sbjct 5488 TTCCAGTTGCTTGCCTGCAAAGATGAGACGTTGTTGATCTGGTGGGATTCCTTCTTTGTC 5429 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||| || |||| ||| | || || || ||||| || || || | |||||| || Sbjct 5428 TTGAATCTTTGTCTTCACATTCTCAATTGTGTCGCTTGCCTCAACCTCAAGGGTAATAGT 5369 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||| |||| ||||| |||||||| |||||| Sbjct 5368 TTTACCAGTCAAGGTTTTCACAAAAATCTGCATA 5335 Score = 107 bits (118), Expect = 1e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 || ||| ||||||||||| || ||||| || || ||||| || | ||| | || Sbjct 5320 TAGAACCAAATGAAGGGTCGATTCTTTCTGGATATTGTAGTCAGACAAGGTTCGACCATC 5261 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||| | ||||||||||||| | || | ||| |||||||| || || |||||||| || Sbjct 5260 TTCCAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGGTCTGGCGGGATGCCTTCTTTATC 5201 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 |||||| |||| || |||| || || ||||| || || |||| || || || Sbjct 5200 TTGAATTTTCGTCTTCACGTTTTCAATCGTGTCGCTTGGCTCAACTTCTAGAGTGATCGT 5141 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| ||||| || ||||| |||||| Sbjct 5140 CTTGCCAGTCAAGGTTTTCACGAAAATCTGCATA 5107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361424161965873