Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq109567 107 1e-18 >seq109567 Length=8344 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||| | || || ||||| || |||||||| |||||||| | | || ||| Sbjct 5088 ACCAAATGAAGGGTTGATTCTTTCTGGATATTGTAGTCAGACAAGGTTCGGCCATCTTCC 5029 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | ||| || ||| || || | |||||| || || | || ||||||||||| || | Sbjct 5028 AGTTGTTTGCCAGCGAAAATGAGACGTTGTTGATCTGGCGGGATGCCTTCTTTGTCTTGA 4969 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 || | ||||| ||| |||||||||| | || | ||| || ||||| ||||| || Sbjct 4968 ATTTTCGTCTTTACATTTTCAATCGTGTCGCTTGGCTCAACTTCTAGAGTGATCGTCTTG 4909 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || | ||||| |||||||| ||||| Sbjct 4908 CCAGTCAAGGTTTTCACGAAAATCTGCAT 4880 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||| | ||||| ||||| || |||||||| |||||||| | | || ||| Sbjct 5316 ACCAAATGAAGGGTCGATTCTTTCTGGATATTGTAGTCAGACAAGGTTCGACCATCTTCC 5257 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | ||| || ||| || || | ||| || ||||| | || ||||||||||| || | Sbjct 5256 AGTTGTTTGCCAGCGAAAATGAGACGCTGTTGGTCTGGCGGGATGCCTTCTTTATCTTGA 5197 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 || | || || ||| |||||||||| | || | ||| || ||||| ||||| || Sbjct 5196 ATTTTCGTCTTCACGTTTTCAATCGTGTCGCTTGGCTCAACTTCTAGAGTGATCGTCTTG 5137 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || | ||||| |||||||| ||||| Sbjct 5136 CCAGTCAAGGTTTTCACGAAAATCTGCAT 5108 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/213 (69%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG----TC 33216 ||||| || | || || ||||| || || ||||||||||||| | ||| | || Sbjct 5772 ACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAATCAGACA----GGGTTCGGCCATC 5717 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 |||| |||||| || ||| || | |||||| ||||| | || || |||||||| || Sbjct 5716 TTCCAGTTGCTTGCCTGCAAAGATGAGACGTTGTTGGTCTGGTGGGATCCCTTCTTTGTC 5657 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 ||| ||| || | | ||| |||||| | | || || || || ||||| || Sbjct 5656 TTGAATTTTGGTTTTCACATTCTCAATGGTGTCGCTTGCTTCCACTTCTAGGGTTATTGT 5597 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| || || || ||||| || ||||| ||||| Sbjct 5596 TTTGCCAGTCAGGGTTTTCACAAAAATCTGCAT 5564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318113041647594