Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq109567 102 7e-17 >seq109567 Length=8344 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || || |||||||| || ||||||||||| || ||| ||||||| Sbjct 5772 ACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAATCAGACAGGGTTCGGCCATCTTCC 5713 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | ||| ||||| ||| | || || | ||||| || || | ||||||||||| | Sbjct 5712 AGTTGCTTGCCTGCAAAGATGAGACGTTGTTGGTCTGGTGGGATCCCTTCTTTGTCTTGA 5653 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| |||||| | ||| | |||| | |||| ||| | ||| || |||||| Sbjct 5652 ATTTTGGTTTTCACATTCTCAATGGTGTCGCTTGCTTCCACTTCTAGGGTTATTGTTTTG 5593 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || |||| ||||| |||||||| ||||| Sbjct 5592 CCAGTCAGGGTTTTCACAAAAATCTGCAT 5564 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || || |||||||| ||||||||||| || | || |||| |||||| Sbjct 4860 ACCAAGTGAAGGGTTGATTCTTTCTGTATGTTGTAGTCACTCAAAGTTCGGCCATCTTCG 4801 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATC-GACGGGCACGCCTTCTTTGTCGGC 20118 | ||||||||| || | || || | ||||| || | |||| | |||||||||||| Sbjct 4800 AGTTGTTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGCGGG-ATGCCTTCTTTGTCTTG 4742 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 ||| || || || | | | || ||| | ||||| || | ||| || || || Sbjct 4741 AATCTTCGTCTTTACATTCTCGATAGTATCACTGGGTTCAACCTCAAGGGTGATAGTCTT 4682 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| || || ||||| ||||| |||||||| Sbjct 4681 GCCAGTTAAGGTTTTCACAAAGATTTGCAT 4652 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| || || |||||||| || || ||||| || || ||| ||||||| Sbjct 5088 ACCAAATGAAGGGTTGATTCTTTCTGGATATTGTAGTCAGACAAGGTTCGGCCATCTTCC 5029 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATC-GACGGGCACGCCTTCTTTGTCGGC 20118 | ||||||||| || |||| || | |||||||| | |||| | |||||||||||| Sbjct 5028 AGTTGTTTGCCAGCGAAAATGAGACGTTGTTGATCTGGCGGG-ATGCCTTCTTTGTCTTG 4970 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 |||||| || || | ||| | |||| || || ||| | || || || || Sbjct 4969 AATTTTCGTCTTTACATTTTCAATCGTGTCGCTTGGCTCAACTTCTAGAGTGATCGTCTT 4910 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| ||||| ||||| || ||||| ||||| Sbjct 4909 GCCAGTCAAGGTTTTCACGAAAATCTGCAT 4880 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| || || ||||| || || || ||||| || || ||| | ||||||| Sbjct 5544 ACCAAATGAAGGGTTGATTCCTTCTGGATATTGTAGTCAGACAAGGTTCGACCATCTTCC 5485 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | ||| ||||| ||| | || || | |||||||| || | ||||||||||| | Sbjct 5484 AGTTGCTTGCCTGCAAAGATGAGACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGA 5425 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || ||| ||||| | ||| | |||| | || || | |||||| ||||| Sbjct 5424 ATCTTTGTCTTCACATTCTCAATTGTGTCGCTTGCCTCAACCTCAAGGGTAATAGTTTTA 5365 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || ||||| ||||| |||||||| ||||| Sbjct 5364 CCAGTCAAGGTTTTCACAAAAATCTGCAT 5336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418712483023893