Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq109567 163 7e-35 seq157723 123 6e-23 seq56214 86.0 1e-11 >seq109567 Length=8344 Score = 163 bits (180), Expect = 7e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || | ||| | || || | ||| | || ||||| ||||| ||||| |||||| Sbjct 5565 ATACCACCACGTAGACGTAGAACCAAATGAAGGGTTGATTCCTTCTGGATATTGTAGTCA 5506 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | |||| ||| ||||| ||||| || || ||||| || || | |||||||| || Sbjct 5505 GACAAGGTTCGACCATCTTCCAGTTGCTTGCCTGCAAAGATGAGACGTTGTTGATCTGGT 5446 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||||| || |||||||||| || ||||| || | || ||||| | || Sbjct 5445 GGGATTCCTTCTTTGTCTTGAATCTTTGTCTTCACATTCTCAATTGTGTCGCTTGCCTCA 5386 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || |||||||| |||||||| | ||||| ||||| |||||||| Sbjct 5385 ACCTCAAGGGTAATAGTTTTACCAGTCAAGGTTTTCACAAAAATCTGCAT 5336 Score = 158 bits (174), Expect = 3e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || | ||| | || || | ||| | || ||||||||||| ||||| |||||| Sbjct 5109 ATACCACCACGTAGACGTAGAACCAAATGAAGGGTTGATTCTTTCTGGATATTGTAGTCA 5050 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | |||| || ||||| |||||||| ||||| ||||| || | |||||||| || Sbjct 5049 GACAAGGTTCGGCCATCTTCCAGTTGTTTGCCAGCGAAAATGAGACGTTGTTGATCTGGC 4990 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || ||||| || | ||||||||||| | || ||||| || || Sbjct 4989 GGGATGCCTTCTTTGTCTTGAATTTTCGTCTTTACATTTTCAATCGTGTCGCTTGGCTCA 4930 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || ||||| ||||| | ||||| || || |||||||| Sbjct 4929 ACTTCTAGAGTGATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCAT 4880 Score = 158 bits (174), Expect = 3e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || | ||| | || || | ||| | || ||||||||||| ||||| |||||| Sbjct 5337 ATACCACCACGTAGACGTAGAACCAAATGAAGGGTCGATTCTTTCTGGATATTGTAGTCA 5278 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | |||| ||| ||||| |||||||| ||||| ||||| || | |||||| || || Sbjct 5277 GACAAGGTTCGACCATCTTCCAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGGTCTGGC 5218 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||||||||| ||||| || | || || ||||| | || ||||| || || Sbjct 5217 GGGATGCCTTCTTTATCTTGAATTTTCGTCTTCACGTTTTCAATCGTGTCGCTTGGCTCA 5158 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || ||||| ||||| | ||||| || || |||||||| Sbjct 5157 ACTTCTAGAGTGATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCAT 5108 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || |||||| | ||||| || ||||| |||||||| ||| Sbjct 4848 GTTGATTCTTTCTGTATGTTGTAGTCACTCAAAGTTCGGCCATCTTCGAGTTGTTTGCCA 4789 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||||| || || || || |||||||| || |||||||| | ||| Sbjct 4788 GCGAAGATGAGACGTTGTTGGTCTGGCGGGATGCCTTCTTTGTCTTGAATCTTCGTCTTT 4729 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||||| || ||||| ||||| || || |||||||| ||||| | ||| Sbjct 4728 ACATTCTCGATAGTATCACTGGGTTCAACCTCAAGGGTGATAGTCTTGCCAGTTAAGGTT 4669 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 4668 TTCACAAAGATTTGCAT 4652 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||||||||| || || ||||| || |||| || ||||| ||||| || || Sbjct 5760 GTGGATTCTTTCTGAATGTTGTAATCAGACAGGGTTCGGCCATCTTCCAGTTGCTTGCCT 5701 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||||| || || || || |||||||| || ||||| || | ||| Sbjct 5700 GCAAAGATGAGACGTTGTTGGTCTGGTGGGATCCCTTCTTTGTCTTGAATTTTGGTTTTC 5641 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||||| | ||| || ||||| || || || || ||||| || ||| Sbjct 5640 ACATTCTCAATGGTGTCGCTTGCTTCCACTTCTAGGGTTATTGTTTTGCCAGTCAGGGTT 5581 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 5580 TTCACAAAAATCTGCAT 5564 >seq157723 Length=4480 Score = 123 bits (136), Expect = 6e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 268829 GAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTT 268888 || |||||| || || ||| |||| | || || ||||| | ||||||||||| || Sbjct 3288 GATGAAAGACATTTCATCTCTCATATCTTAGCCTTCTTTGCTGCCAGTGATGGTATTGTG 3229 Query 268889 AACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTT 268948 || ||||| | || ||| |||| ||||| ||||| | || ||||| | || ||| Sbjct 3228 AATGAAAACTTGGTTGAGTGTTTCTCACAAGAAGTACAAGTGCCAGAAGCTCGTTGCTTT 3169 Query 268949 TACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGAT 269008 || || ||||| ||||| || ||||| || |||||||||||||| |||||| | |||||| Sbjct 3168 TATGGTTTCCAAATAGCAATGGAAAACATCCATTCAGAGATGTATAGTCTACTCATAGAT 3109 Query 269009 ACTTATAT 269016 || || || Sbjct 3108 ACATACAT 3101 Score = 120 bits (132), Expect = 7e-22 Identities = 101/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || |||||||| ||||| ||||| || ||||| || || || ||||| ||||||||||| Sbjct 2903 GTAGCTTTTGCTGCTGTTGAAGGCATCTTCTTCTCAGGATCATTTGCATCTATCTTTTGG 2844 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 |||||||| | ||||||||||| || ||||||||||| || || | |||||||| || Sbjct 2843 CTGAAGAAACGTGGCCTTATGCCTGGTTTAACTTTCTCCAATGAGCTCATAAGCAGAGAT 2784 Query 269258 GAAG 269261 |||| Sbjct 2783 GAAG 2780 >seq56214 Length=996 Score = 86.0 bits (94), Expect = 1e-11 Identities = 111/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 104310 AGTCTT-TCCATAC-TTTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGA 104367 |||||| | | ||| ||| ||| ||| |||| || | || || ||||| | || || Sbjct 514 AGTCTTCTTCTTACGTTTCTTTCCTCCACCTCGTAATCGGAGCACAAGATGAAGGGTGGA 573 Query 104368 TTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAA 104427 ||||||||| |||||||| ||| | |||| || || || | ||||| || ||||| Sbjct 574 TTCTTTCTGGATATTATAATCACTCAAGGTTCGGCCATCCTCCAACTGTTTGCCGGCAAA 633 Query 104428 AATTAGCCTCTGTTGATCAGGAGGTATTCCT 104458 ||||| ||||||||| || ||||| || ||| Sbjct 634 AATTAACCTCTGTTGGTCTGGAGGAATGCCT 664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1148874976196524