Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq109567 104 2e-17 >seq109567 Length=8344 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | || ||||| || || | ||| || || |||| ||| | ||| || Sbjct 4860 ACCAAGTGAAGGGTTGATTCTTTCTGTATGTTGTAGTCACTCAAAGTTCGGCCATCTTCG 4801 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || ||||| || | ||||| | | ||| || ||||| || || ||||||||||| | | Sbjct 4800 AGTTGTTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGCGGGATGCCTTCTTTGTCTTGA 4741 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || | ||| || ||| ||| ||| | | || || |||| ||||| || || Sbjct 4740 ATCTTCGTCTTTACATTCTCGATAGTATCACTGGGTTCAACCTCAAGGGTGATAGTCTTG 4681 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 ||||| | |||||||||||||| |||||| Sbjct 4680 CCAGTTAAGGTTTTCACAAAGATTTGCATG 4651 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | ||| ||||| || || | ||| ||||| || || | ||| ||| Sbjct 5772 ACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAATCAGACAGGGTTCGGCCATCTTCC 5713 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || || || || ||||||| | | ||| || ||||| || || ||||||||||| | | Sbjct 5712 AGTTGCTTGCCTGCAAAGATGAGACGTTGTTGGTCTGGTGGGATCCCTTCTTTGTCTTGA 5653 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG-GTCGACGTCAATCGTGATGGTTTT 94977 ||||| | || || | | ||||| || || || || || | || || ||||| Sbjct 5652 ATTTTGGTTTTCACATTCTCAATGGTGTC-GCTTGCTTCCACTTCTAGGGTTATTGTTTT 5594 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || ||||||||||| |||||||| Sbjct 5593 GCCAGTCAGGGTTTTCACAAAAATCTGCAT 5564 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 ||||| || | || |||||||| || | || || || || || ||| || ||| | Sbjct 5544 ACCAAATGAAGGGTTGATTCCTTCTGGATATTGTAGTCAGACA-AG-GTTCGACCATCTT 5487 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 |||| || || || ||||||| | | ||| |||||||| || || ||||||||||| | Sbjct 5486 CCAGTTGCTTGCCTGCAAAGATGAGACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCTT 5427 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG-GTCGACGTCAATCGTGATGGTT 94975 ||| |||| ||| || | | ||||| || || || || |||| || || ||| Sbjct 5426 GAATCTTTGTCTTCACATTCTCAATTGTGTC-GCTTGCCTCAACCTCAAGGGTAATAGTT 5368 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| | ||||||||||| |||||||| Sbjct 5367 TTACCAGTCAAGGTTTTCACAAAAATCTGCAT 5336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447332680567080